Sequence of DPV Tobacco etch virus
Tobacco etch virus isolate Ebony Park HC5 helper component protein gene, partial cds.
ACC No: DQ871342
Dated: 2007-09-11 | Length: 1377 | CRC: -547395933
ID DQ871342; SV 1; linear; genomic RNA; STD; VRL; 1377 BP.
XX
AC DQ871342;
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DT 28-AUG-2006 (Rel. 88, Created)
DT 11-SEP-2007 (Rel. 93, Last updated, Version 2)
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DE Tobacco etch virus isolate Ebony Park HC5 helper component protein gene,
DE partial cds.
XX
KW .
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OS Tobacco etch virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1377
RA Spence A.;
RT "Genetic Characterization of TEV Infecting Scotch Bonnet Pepper in
RT Jamaica";
RL Unpublished.
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RN [2]
RP 1-1377
RA Spence A.;
RT ;
RL Submitted (31-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL Department of Basic Medical Sciences, Biochemistry Section, The University
RL of the West Indies, Mona, Kingston 7, Jamaica
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FH Key Location/Qualifiers
FH
FT source 1. .1377
FT /organism="Tobacco etch virus"
FT /isolate="Ebony Park HC5"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12227"
FT CDS <1. .>1377
FT /codon_start=1
FT /product="helper component protein"
FT /note="HC"
FT /db_xref="GOA:Q0GDV0"
FT /db_xref="InterPro:IPR001456"
FT /db_xref="UniProtKB/TrEMBL:Q0GDV0"
FT /protein_id="ABI30958.1"
FT /translation="SDKSISEAFFIPYSTKFLELRPDGISHECTRGVSVERCGEVAAIL
FT TQALSPCGKITCKRCMVETPDIVGSESGESVTNQGKLLTMLREQYPDFPMAEKLLTRFL
FT QQKSLVSTNLTACVSVKQLIGDRKQAPFTHVLAVSEILFKGNRLTGTDLEEASTHMLEI
FT ARFLNNRTENMRIGHLGSFRNKISSKAHVNNALMCDNQLDQNGNFIWGLRGAHAKRFLK
FT GFFTEIDPNEGYDKYVVRKHIRGSRKLAIGNLIMSTDFQTLRQQIQGETIERKEIGNYC
FT ISMRNGNYVYPCCCVTLEDGKAQYSDLKXPTKRHLVIGNSGDSKYLDFPVLNEEKMYIA
FT NEGYCYMNIFFALLVNVKEEDAKDFTKFIRDTIVPKLGAWPTMQDVATACYLLSILYPD
FT VLSAELPRILVDHDNKTMHVLDSYGSKTTGYHMLKMNTTSQLIEFVHSGLESEMKTYNV
FT G"
XX
SQ Sequence 1377 BP; 442 A; 271 C; 309 G; 354 T; 1 other;
dq871342 Length: 1377 11-SEP-2007 Type: N Check: 6206 ..
1 agcgacaagt caatctctga ggcatttttt ataccatact ctacgaaatt
51 cttggagttg agaccagatg gaatctccca tgagtgtaca agaggtgtat
101 cagttgagcg gtgcggtgag gtggctgcaa tcctgacaca agcactttca
151 ccgtgtggta agatcacatg taaacgttgc atggttgaaa cacctgacat
201 tgttggaagt gagtcgggag aaagcgtcac taaccaaggc aagctcctta
251 caatgttgag agaacagtat ccagatttcc caatggccga gaaactactc
301 acaaggtttt tgcaacagaa atcactagta agcacaaatt tgacggcctg
351 cgtgagcgtc aaacagctca ttggagaccg taaacaagct ccattcacac
401 atgtactggc tgttagcgaa attctgttca aaggcaatag actgacagga
451 actgatctcg aagaggcaag cacgcacatg cttgaaatag caaggttctt
501 aaacaatcgc actgagaata tgcgcattgg ccacctcggt tccttcagaa
551 acaaaatatc atcaaaggcc catgtgaata acgcactcat gtgtgataat
601 caactcgatc agaatgggaa ttttatttgg gggctaaggg gtgcacacgc
651 aaagaggttt ctcaaaggat tttttactga gattgaccca aatgaaggat
701 acgataagta tgtagtcagg aaacatatca ggggtagcag aaagctagca
751 attggcaatc tgataatgtc aactgacttc caaacgctca ggcaacagat
801 tcaaggcgaa actattgagc gtaaagaaat tgggaattac tgcatttcaa
851 tgcgaaacgg taattacgta tacccatgtt gttgtgttac ccttgaagat
901 ggtaaggctc aatactcaga tttaaagcnc ccaacaaaga gacatctggt
951 cattggcaac tctggcgatt caaagtacct ggactttcca gttcttaatg
1001 aagagaaaat gtatatagct aacgaaggtt attgctacat gaacattttc
1051 tttgctctac tagtgaatgt caaagaagag gatgcaaagg acttcaccaa
1101 gtttataagg gacacaattg ttccaaagct tggagcgtgg ccaacgatgc
1151 aggatgttgc aactgcatgc tacttacttt ctattcttta cccagatgtc
1201 ctgagtgctg agttacccag aattttggtt gatcatgaca acaaaacaat
1251 gcatgttttg gattcgtatg ggtctaaaac gacagggtac cacatgttga
1301 agatgaacac aacatcccaa ctaattgaat tcgttcattc aggattggaa
1351 tccgaaatga aaacttataa tgttgga