Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus strain Br20RB NSs and N genes, complete cds.
ACC No: DQ915947
Dated: 2006-10-02 | Length: 2926 | CRC: 238919906
ID DQ915947; SV 1; linear; genomic RNA; STD; VRL; 2926 BP.
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AC DQ915947;
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DT 02-OCT-2006 (Rel. 89, Created)
DT 02-OCT-2006 (Rel. 89, Last updated, Version 1)
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DE Tomato spotted wilt virus strain Br20RB NSs and N genes, complete cds.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-2926
RA Margaria P., Ciuffo M., Turina M.;
RT "Evidence that NSs protein of Tomato spotted wilt virus is the avirulence
RT determinant in the interaction with resistant pepper carrying the TSW
RT gene";
RL Unpublished.
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RN [2]
RP 1-2926
RA Margaria P., Ciuffo M., Turina M.;
RT ;
RL Submitted (23-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL IVV, CNR, Strada delle Cacce 73, Torino, TO 10135, Italy
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FH Key Location/Qualifiers
FH
FT source 1. .2926
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /lab_host="pepper"
FT /strain="Br20RB"
FT /mol_type="genomic RNA"
FT /country="Brazil"
FT /collection_date="Mar-2006"
FT /note="TSW resistance breaking strain; derived from Br20 in
FT a controlled environment"
FT /db_xref="taxon:11613"
FT CDS 89. .1492
FT /codon_start=1
FT /product="NSs"
FT /note="nonstructural protein; putative silencing
FT suppressor"
FT /protein_id="ABI94068.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ
FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDNSVLALSVCSNT
FT VNANGVKHQGHLKVLSPAQLHSIESIMNRSDITDRFQLQEKDIIPNDKYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPNVLKQVSIQKLFKVAGDETNKTFYLSI
FT ACIPNHNSVETALNITVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNLELTPGKLDLGERTLNYSEDAYKRKYFLSKT
FT LECLPSNTQTMSYLNSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKV
FT KEAYASGSK"
FT CDS complement(1997. .2773)
FT /codon_start=1
FT /product="N"
FT /note="nucleocapsid"
FT /protein_id="ABI94069.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENIDQI
FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGGTDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTKEALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLAELA"
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SQ Sequence 2926 BP; 926 A; 563 C; 468 G; 969 T; 0 other;
dq915947 Length: 2926 02-OCT-2006 Type: N Check: 1898 ..
1 agagcaattg tgtcagaatt ttgttcataa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt cgatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctcaact agttcagacc cagctgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa ggtaggggat cttccctgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcatcaatat tgataactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatgcta acggagtgaa acatcaaggt catttgaagg ttttgtctcc
451 tgcccagctc cactctattg aatctatcat gaacagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcccaatga caaatacatt
551 gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgagatg tgctataatc aggctttagg caaagtgaat gttctatctc
651 ctaacagaaa tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtaaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcaa gcttttgtca
801 aagcttccac tgattctcat ttcaagctga gcctctggct aagggttcca
851 aatgttttga agcaggtttc cattcagaaa ttgttcaagg ttgcaggaga
901 tgaaacaaac aaaacatttt atttatctat tgcctgcatt ccaaaccata
951 acagtgttga gacagcttta aacattactg ttatttgcaa gcatcagctc
1001 ccaattcgca aatgcaaagc tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga cccttcatac ccccaaagga
1101 tcgttcatgc tctgctcgaa actcacacat cttttgcaca agttctttgc
1151 aacaacttgc aagaagatgt aatcatctac actttgaaca accttgagct
1201 aactcctgga aagttagatt taggtgaaag aaccttgaat tacagtgaag
1251 atgcctacaa gaggaaatat ttcctttcaa aaacacttga atgtcttcca
1301 tctaacacac aaactatgtc ttacttaaac agcatccaaa tcccttcatg
1351 gaagatagac tttgccagag gagaaattaa aatttctcca caatctattt
1401 cagttgcaaa atctttgtta aagcttgatt taagcgggat caaaaagaaa
1451 gaatctaagg ttaaggaagc gtatgcttca ggatcaaaat aatcttgctt
1501 tgtccagctt tttctaatta tgttatgttt attttctttc tttacttata
1551 attatttctc tgtttgtcat ctctttcaaa ttcctcctgt ctagtagaaa
1601 ccataaaaac aaaaaataaa aatgaaaata aaattaaaat aaaataaaat
1651 caaaaaatga aataaaaaca acaaaaaatt aaaaaacaaa aaaccaaaaa
1701 agatcccgaa agggacaatt tggccaaatt tgggttttgt ttttgttttt
1751 tgttttttgt tttttatttt ttattttatt tttattttat tttattttta
1801 ttttattttt attttattta ttttttgttt tcgttgtttt tgttatttta
1851 ttatttatta agcacaacac acagaaagca aactttaatt aaacacactt
1901 atttaaaatt taacacacta agcaagcaca agcaataaag ataaagaaag
1951 ctttatatat ttataggctt ttttataatt taacttacag cttctttcaa
2001 gcaagttctg cgagttttgc ctgcttttta accccgaaca tttcatagaa
2051 cttgttaaga gtttcactgt aatgttccat agcaacactc cctttagcat
2101 taggattgct ggagctaagt atagcagcat actctttccc cttcttcacc
2151 tgatcttcat tcatttcaaa tgctttgctt ttcagcacag tgcaaacttt
2201 tcctaaggct tccttggtgt catacttctt tgggtcgatc ccgaggtcct
2251 tgtattttgc atcctgatat atagccaaga caacactgat catctcaaag
2301 ctatcaactg aagcaataag aggtaagcta cctcccagca ttatggcaag
2351 tctcacagac tttgcatcat cgagaggtaa tccataggct tgaatcaaag
2401 ggtgggaagc aatcttagat ttgatagtat tgagattctc agaattccca
2451 gtttcttcaa caagcctgac cctgatcaag ctatcaagcc ttctgaaggt
2501 catgtcagtg cctccaatcc tgtctgaagt tttctttatg gtaattttac
2551 caaaagtaaa atcgctttgc ttaataacct tcattatgct ctgacgattc
2601 tttaggaatg tcagacatga aataacgctc atcttcttga tctggtcgat
2651 gttttccaga caaaaagtct tgaagttgaa tgctaccaga ttctgatctt
2701 cctcaaactc aaggtctttg ccttgtgtca acaaagcaac aatgctttcc
2751 ttagtgagct taaccttaga catgatgatc gtaaaagttg ttatatgctt
2801 tgaccgtatg taactcaagg tgcgaaagtg caactctgta tcccgcagtc
2851 gtttcttagg ttcttaatgt gatgatttgt aagactgagt gttaaggtat
2901 gaacacaaaa ttgacacgat tgctct