Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus clone Vol47c3 segment RNA2 polyprotein gene, complete cds.
ACC No: DQ922655
Dated: 2009-07-31 | Length: 3333 | CRC: -225386831
ID DQ922655; SV 1; linear; genomic RNA; STD; VRL; 3333 BP.
XX
AC DQ922655;
XX
DT 19-SEP-2006 (Rel. 89, Created)
DT 31-JUL-2009 (Rel. 101, Last updated, Version 2)
XX
DE Grapevine fanleaf virus clone Vol47c3 segment RNA2 polyprotein gene,
DE complete cds.
XX
KW .
XX
OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup A.
XX
RN [1]
RP 1-3333
RA Pompe-Novak M., Gutierrez-Aguirre I., Vojvoda J., Blas M., Tomazic I.,
RA Vigne E., Fuchs M., Ravnikar M., Petrovic N.;
RT "Genetic variability within RNA2 of Grapevine fanleaf virus";
RL Eur. J. Plant Pathol. 117(3):307-312(2007).
XX
RN [2]
RP 1-3333
RA Pompe-Novak M., Gutierrez-Aguirre I., Vojvoda J., Blas M., Tomazic I.,
RA Vigne E., Fuchs M., Ravnikar M., Petrovic N.;
RT ;
RL Submitted (28-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL Plant Physiology and Biotechnology, National Institute of Biology, Vecna
RL Pot 111, Ljubljana 1000, Slovenia
XX
FH Key Location/Qualifiers
FH
FT source 1. .3333
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /host="Vitis vinifera cv. Volovnik"
FT /isolate="Vol47"
FT /mol_type="genomic RNA"
FT /country="Slovenia"
FT /clone="Vol47c3"
FT /db_xref="taxon:12274"
FT CDS 1. .3333
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains homing protein (2A), movement protein (2B)
FT and coat protein (2C)"
FT /db_xref="GOA:Q09G92"
FT /db_xref="InterPro:IPR005306"
FT /db_xref="UniProtKB/TrEMBL:Q09G92"
FT /protein_id="ABI63919.1"
FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSIEQWLMAINTDSSFRQTVKE
FT DVQDNRDEPSAIWMFSWKLGYGPIDNPEKCDWHFVLTGERPTQPSRPVKADEVVVVPQS
FT KKVTIPSPPPPPTPYFRAVGAFAPTRSGFVRATVERLTREREESRAAALFAELPLEYPQ
FT GAPLKLSLAMKFAMLKHTTWRRWYDTSDERLLKAHPGGPCFPPPPPIQSPPSFQERVRE
FT FCRMKSCAKAFALETSLGLNKAWVGLVDIPSTSVCCADGRTTGGQTIAQEADPLQHRVS
FT TSVAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL
FT PPLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYDPVSEEEMEEYRDRGMS
FT AVVVDALEIAINPFGMPGNPTDLTVVATYGHERDMVRAFIGSASTFLGNGLARAIFFPG
FT LQYGQGEPRRESIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVANTVHQAQ
FT VQGTTLRATMMGNTVVVSPEGSLVTGTPEAKVEIGGGSSIRMVGPLQWESVEEPGQTFS
FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMI
FT SDFKGVQYEKWITAGLVMPTFKIVIRLPANAFTGLTWVMSFDAYNRITSRITTSADPVY
FT TLSVPHWLIHHKLGTFSCEVDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ
FT AVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALKSAGLTLGQ
FT VPMVGTTKVYNLNSTLVSCVLGMGGTIRGRVHICAPVFYSIVLWVVSEWNGTTMDWNEL
FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLVGQSQRDMSSLNFYAIAGPIAPSGETARL
FT PIVVQIDEIVRPDLSLPSFEDDYFVWVDFSEFTLDKEEIEIGSRFFDFTSRTCRVSMGE
FT NPSAAMIACHGLHSGVLDLKFQWSLNTEFGKSSGSVTITKLVGDKATGLDGPSQIFALQ
FT KLEGVSELLVGNFAGANPNTHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTS
FT FPV"
XX
SQ Sequence 3333 BP; 801 A; 746 C; 891 G; 895 T; 0 other;
dq922655 Length: 3333 31-JUL-2009 Type: N Check: 6335 ..
1 atgggcaaat tttactactc caacaggcgt ctggcctgtt gggcagctgg
51 gaagaacccc caccttgggg gttccataga acaatggctg atggccatta
101 atactgactc ctccttccgc caaactgtaa aggaggacgt ccaggataat
151 cgggatgagc cttcggctat ctggatgttt tcctggaaat tgggatacgg
201 gcccattgac aacccggaaa aatgcgattg gcatttcgtc ctcacgggcg
251 agaggccaac acagccgtcc cggccggtta aagccgatga ggttgtggtg
301 gtgccacaat cgaagaaggt gacgattcca tcgccacctc ctcccccaac
351 tccctatttt agggctgttg gggcttttgc accaacccgg tccgggtttg
401 ttcgggccac tgtggaaagg ctcacccgtg aacgggaaga gtcgagagct
451 gcggcactct ttgccgaatt gccattggag taccctcagg gtgctccttt
501 gaagttgagc ctggcaatga agtttgccat gctcaaacat accacttgga
551 ggaggtggta tgacactagt gatgagcgcc tcttgaaggc tcatcctggt
601 ggtccttgtt ttcctcctcc tcccccaatc caaagtcctc cctcttttca
651 agagagggtt agggaattct gcaggatgaa atcctgtgcc aaggcttttg
701 ccttggaaac ctctctgggt ctcaataagg cctgggttgg tttggtagac
751 atccccagca cctctgtgtg ctgtgcggat ggtagaacta ccggtgggca
801 aacgattgct caagaagctg accctttgca acatagggtc agcacatcag
851 tagcccccgg tagggcacaa tggatctccg agcgcagaca ggctctgcga
901 aggagagagc aagcaaatag cttgcagggt cttgctgctc agactgatat
951 gacttttgag caggccagga acgcctatct tggcgctgct gacatgattg
1001 agcaaggcct accgctactt ccccctctgc gcagcgctta tgcccctagg
1051 ggcttgtgga ggggaccctc aaccagagcc aattacacgc ttgatttcag
1101 gctcaatggt attccgactg ggacaaacac attggaaata ttgtacgatc
1151 ccgtgtcgga agaagagatg gaagagtacc gggacagagg catgtcggct
1201 gtggtggttg atgcgctaga aatagctata aacccattcg gcatgcctgg
1251 aaatccaacg gacttgactg tcgtggcaac ttatgggcat gaacgtgata
1301 tggtgcgtgc ctttattgga tctgcttcca cattcttagg gaatgggtta
1351 gctagagcca ttttctttcc tggcttgcaa tatggtcagg gggaaccaag
1401 gcgcgaatct ataattcgcc tgtatgttgc ttctactaac gccactgtgg
1451 atactgattc agtcttggcg gccattagtg ttggcacctt gcgtcaacac
1501 gttggctcca tgcactatcg tactgtggca aataccgtgc accaggccca
1551 ggtgcaagga acgacactca gggccactat gatgggtaat actgttgtag
1601 tgtcacctga aggaagccta gtcactggaa cccccgaagc gaaagtcgaa
1651 atagggggtg gttcaagtat taggatggtg ggacctctgc aatgggagag
1701 tgtagaggaa ccagggcaaa ctttctctat cagaagtcgc tcacgttccg
1751 tgaggattga tagaaatgtt gatcttcctc aacttgaggc tgagcccaga
1801 ttgagctcaa ccgtgagggg attggctggt agaggagtga tttatattcc
1851 caaggattgc caggcaaata ggtacttggg caccctgaat atacgtgata
1901 tgatttcaga tttcaaaggt gttcagtacg aaaagtggat aactgcagga
1951 ctagtcatgc ctacctttaa gatagttatt aggctacctg ctaatgcttt
2001 tactggattg acgtgggtga tgagctttga cgcttataac cggataacta
2051 gtagaattac tactagtgca gatcctgtat acaccttgtc agtcccacat
2101 tggcttatcc accataagtt gggtacgttt tcttgtgagg tggactacgg
2151 agagttgtgt ggtcatgcta tgtggttcaa gtccacaact tttgaatctc
2201 cgagactaca ttttacgtgt ctcactggca acaacaaaga gctggcggcg
2251 gactggcaag ctgtcgtaga gctatatgct gaattggaag aagctacttc
2301 ttttcttggg aaaccaactt tggtttttga cccaggcgtt tttaatggca
2351 aattccaatt cctgacttgc cctcccatat tctttgatct cacagccgtc
2401 acggctctta agagtgctgg gctgacgttg ggacaagtcc caatggttgg
2451 cactaccaag gtttataatc taaatagcac tcttgtgagt tgtgttctag
2501 gaatgggggg tactattagg ggaagggtgc acatttgtgc gccagtcttc
2551 tatagtatag tgctgtgggt cgtgagtgag tggaacggga ccactatgga
2601 ctggaatgaa cttttcaagt atcccggggt gtatgtggaa gaggacggaa
2651 gttttgaagt taaaattcgc tctccatatc accgaacgcc cgctagattg
2701 cttgtcggcc aaagtcagag ggacatgagc tctctgaatt tctatgcaat
2751 agcgggacct attgctcctt cgggtgagac tgcacgactt cctattgttg
2801 tgcagatcga cgagattgtg cgcccagacc tctctttacc aagttttgaa
2851 gatgattact tcgtatgggt agacttttct gagtttactc tcgacaagga
2901 agaaattgag attggttctc gtttctttga tttcacttca agaacttgta
2951 gagtgtctat gggagaaaac ccatctgctg caatgattgc ttgccatgga
3001 ttgcatagtg gtgtcctgga cctcaaattt caatggagtc tgaacaccga
3051 atttggcaag agtagtggga gcgttaccat aactaaactg gtgggcgata
3101 aagccacggg tctggacggg ccttcacaga tttttgccct acaaaagcta
3151 gagggagttt cggagttgtt ggttgggaat tttgcaggag caaacccaaa
3201 tactcatttt tctctctata gtcgatggat ggcaattaaa ctggatcaag
3251 ctaagagtat taaagtactc cgcgttttat gtaagcctcg tcctggtttt
3301 agtttttatg gaagaaccag tttcccagtc tag