Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus clone Vol54c2 segment RNA2 polyprotein gene, complete cds.
ACC No: DQ922669
Dated: 2009-07-31 | Length: 3330 | CRC: -1919726748
ID DQ922669; SV 1; linear; genomic RNA; STD; VRL; 3330 BP.
XX
AC DQ922669;
XX
DT 19-SEP-2006 (Rel. 89, Created)
DT 31-JUL-2009 (Rel. 101, Last updated, Version 2)
XX
DE Grapevine fanleaf virus clone Vol54c2 segment RNA2 polyprotein gene,
DE complete cds.
XX
KW .
XX
OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup A.
XX
RN [1]
RP 1-3330
RA Pompe-Novak M., Gutierrez-Aguirre I., Vojvoda J., Blas M., Tomazic I.,
RA Vigne E., Fuchs M., Ravnikar M., Petrovic N.;
RT "Genetic variability within RNA2 of Grapevine fanleaf virus";
RL Eur. J. Plant Pathol. 117(3):307-312(2007).
XX
RN [2]
RP 1-3330
RA Pompe-Novak M., Gutierrez-Aguirre I., Vojvoda J., Blas M., Tomazic I.,
RA Vigne E., Fuchs M., Ravnikar M., Petrovic N.;
RT ;
RL Submitted (28-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL Plant Physiology and Biotechnology, National Institute of Biology, Vecna
RL Pot 111, Ljubljana 1000, Slovenia
XX
FH Key Location/Qualifiers
FH
FT source 1. .3330
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /host="Vitis vinifera cv. Volovnik"
FT /isolate="Vol54"
FT /mol_type="genomic RNA"
FT /country="Slovenia"
FT /clone="Vol54c2"
FT /db_xref="taxon:12274"
FT CDS 1. .3330
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains homing protein (2A), movement protein (2B)
FT and coat protein (2C)"
FT /db_xref="GOA:Q09G78"
FT /db_xref="InterPro:IPR005306"
FT /db_xref="UniProtKB/TrEMBL:Q09G78"
FT /protein_id="ABI63933.1"
FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSIEQWLLAISTDPSFRQTVKG
FT DVQDNRDEPSAIRMFSWKLGYGPTDNPEKCDWHFVLTGERPQQPTEPVKAHEVVVPQPK
FT KVVIPSPPPPPTPYFRAVGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQG
FT APLKLSLAMKFAMLKHTTWRKWYDTSDERLFEAHPGGPCFPPPPLIQSPPSLQERIREF
FT CRMKSCARAFALETSLGLNKAWVGLVDIPSTAVCCADGRTTGGQTIAQEADPLQHRVST
FT SVAPGRAQWVSERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLP
FT PLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYWDRGMSA
FT VVIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPGL
FT QYSQEEPRRESIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVASTVHQAQA
FT QGTVLRATMMGNTVVVSPEGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGQIFSI
FT RSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVVYIPKDCQANRYLGTLNIRDMIS
FT DFKGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITSRITTSADPVYT
FT LSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQA
FT VVELYAELEEATSFLGKPTLVFDPGVFDGKFQYLTCPPIFFDLTAVTALKSAGLTLGQV
FT PMVGTTRVYNLNSTLVSCVLGMGGTNKGKVHICAPIFYSIVLWVVSEWNGTTMDWNELF
FT KYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPAGETARLP
FT VVVQIEEIVRPDLSLPSFEDDYFVWVDFSEFTLDKEEIEIGSRFFDFTSNTCRVSMGEN
FT PFAAMIACHGLHSGILDLKLQWSLNTEFGKSSGSVTITKLVGDKAMGLDGPSQVFAIRK
FT LEGTTELLIGNFAGANPNTHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTSF
FT PV"
XX
SQ Sequence 3330 BP; 824 A; 734 C; 877 G; 895 T; 0 other;
dq922669 Length: 3330 31-JUL-2009 Type: N Check: 9056 ..
1 atgggcaaat tttactactc caacaggcgt ctggcctgtt gggcagctgg
51 gaagaacccc caccttgggg gttccataga acaatggctg ttggccatta
101 gtactgaccc ctccttccgc caaactgtaa agggggatgt ccaggataat
151 cgggatgagc cttcggctat ccggatgttt tcctggaaat tgggatacgg
201 gcccactgat aacccggaaa aatgcgactg gcattttgtc ctcacgggcg
251 agaggccaca gcagccgacc gagccggtta aagctcatga ggttgtggtg
301 ccacaaccga agaaggtagt gattccctca ccacctcctc ccccaactcc
351 ctactttagg gctgttgggg cttttgcacc aaccaggtcc gggtttattc
401 gggccactgt ggaaagactc acccgggaac gggaagagtc gagagctgcg
451 gcactctttg ccgaattgcc attggagtat cctcaaggtg ctcctttgaa
501 attgagtctg gcgatgaagt tcgccatgct caaacatacc acttggagga
551 agtggtatga cactagtgat gagcgcctct ttgaggccca tcctggtggt
601 ccttgtttcc ctcctcctcc cctaatccaa agccctccct ctcttcagga
651 gaggataagg gagttctgca ggatgaagtc ctgcgccagg gcttttgccc
701 tggaaacctc tctaggtctt aacaaggcct gggtaggttt agtagatatc
751 cccagcactg ctgtgtgctg tgcggatggg agaactaccg gtgggcaaac
801 gattgctcaa gaagctgatc ctttgcaaca tagggtcagc acatctgtgg
851 cccccggtag ggcacaatgg gtctccgagc gcagacaggc tctgcgtagg
901 agagagcagg caaatagcct gcagggcctt gctgctcaga cagacatgac
951 atttgagcag gccaggaatg catatcttgg cgctgctgat atgattgagc
1001 aaggcctacc gctgcttccc cctctacgca gcgcatatgc ccctaggggt
1051 ttgtggaggg gaccctctac cagagccaat tacacattgg attttaggct
1101 caatggtatc ccgactggga caaatacatt agaaattttg tataatcccg
1151 tgtcggaaga ggaaatggaa gagtactggg ataggggtat gtcagccgtg
1201 gtaattgatg cgctagaaat agcgataaat ccatttggca tgcctggtaa
1251 tccaacggac ttaactgttg tggcaacgta cggacatgag cgtgacatga
1301 cacgtgcctt tattggttct gcctccactt tcttgggaaa tgggctggca
1351 cgagctattt tctttcctgg cttacaatat agtcaggagg aaccaaggcg
1401 cgaatctata attcgcctat atgttgcttc tactaatgct actgtagaca
1451 ctgattcagt cttggcagcc attagcgttg gcactctgcg tcaacacgtt
1501 ggttccatgc actatcgaac ggtagctagt actgtgcatc aagcccaggc
1551 gcaaggtacg gtactcaggg ccactatgat gggtaatact gttgtagtgt
1601 cgcctgaagg aagcctagtt actgggaccc ctgaagcgag agttgaaata
1651 gggggtggtt ctagtatcag gatggtagga cctctacaat gggagagtgt
1701 agaggaacca gggcaaatct tctctatcag aagccgctca cgatctgtga
1751 gaattgatag aaatgttgat cttcctcaac ttgaggccga gcccagattg
1801 agctcaaccg tgagaggatt agctggtaga ggagtagttt acatccccaa
1851 ggattgccag gcaaacaggt acttaggcac cctgaacata cgtgatatga
1901 tttcagattt taagggtgtc cagtatgaaa aatggataac tgcaggatta
1951 gtcatgccta ctttcaagat agttgttagg ctacctgcaa atgcctttac
2001 gggattaacg tgggtaatga gctttgatgc ttacaaccgg ataactagta
2051 gaatcactac tagtgctgat cctgtgtata ccctgtctgt accgcattgg
2101 cttatccatc ataagttagg cacgttttct tgtgagatag attatggaga
2151 attgtgtggc catgcaatgt ggtttaaatc cacaacattt gagtctccaa
2201 ggctacattt cacgtgccta actggcaata ataaagagtt ggcagcagac
2251 tggcaagctg ttgttgagct ctacgcagaa ctggaagaag ctacatcctt
2301 tcttggaaaa cccaccttgg tttttgaccc gggtgttttt gatggcaaat
2351 ttcagtattt gacttgcccc cccatattct ttgatctaac agccgtcacg
2401 gctcttaaga gtgctgggct gacgttgggc caggttccaa tggttggcac
2451 tactagggtt tacaacctaa acagtactct tgtgagctgt gttttgggta
2501 tgggaggtac taataaagga aaagtgcaca tttgtgcacc aatcttttat
2551 agtattgttt tatgggttgt tagcgagtgg aacgggacca ctatggactg
2601 gaatgaactt ttcaaatatc ccggggtgta tgtggaagag gatggaagct
2651 ttgaagttaa aattcgttct ccgtatcacc ggacgcctgc taggttgctt
2701 gctggtcaaa gccagaggga tatgagctct ctgaattttt atgcaatagc
2751 agggcccatc gctccagcgg gtgagactgc gcgacttcct gttgtcgtgc
2801 aaattgagga gattgttcgc ccagacctct ccctaccaag ttttgaagac
2851 gactattttg tgtgggtaga cttttctgag tttactcttg ataaggaaga
2901 aattgagatt ggatctcgtt tctttgattt tacttcaaat acttgtaggg
2951 tttctatggg agaaaaccca tttgctgcaa tgattgcttg tcatggattg
3001 catagcggta tattagatct caaactccag tggagtctaa ataccgaatt
3051 tggcaagagc agcgggagcg taactattac gaagttggtg ggtgataaag
3101 ccatgggctt ggatgggcca tctcaggttt ttgccatacg aaaactggag
3151 ggaactacag aattgttgat tgggaatttt gcaggagcaa atcccaacac
3201 tcatttctcc ctctacagtc gatggatggc aattaaactg gatcaagcaa
3251 agagtattaa ggtgctccgt gttttgtgta agcctcgtcc aggtttcagt
3301 ttttatggaa gaaccagctt cccagtctag