Sequence of DPV Melon necrotic spot virus
Melon necrotic spot virus isolate MNSV-ISR from Israel, complete genome.
ACC No: DQ922807
Dated: 2006-10-19 | Length: 4266 | CRC: 121340436
ID DQ922807; SV 1; linear; genomic RNA; STD; VRL; 4266 BP.
XX
AC DQ922807;
XX
DT 19-OCT-2006 (Rel. 89, Created)
DT 19-OCT-2006 (Rel. 89, Last updated, Version 1)
XX
DE Melon necrotic spot virus isolate MNSV-ISR from Israel, complete genome.
XX
KW .
XX
OS Melon necrotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4266
RA Barkan G., Hadas R., Leibman D., Gal-On A.;
RT "Characterization of MNSV isolate infected melon in Israel";
RL Unpublished.
XX
RN [2]
RP 1-4266
RA Barkan G., Hadas R., Leibman D., Gal-On A.;
RT ;
RL Submitted (17-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL Virology, Volcani Center A.R.O, P.O. BOX 6, Bet-Dagan 50250, Israel
XX
FH Key Location/Qualifiers
FH
FT source 1. .4266
FT /organism="Melon necrotic spot virus"
FT /isolate="MNSV-ISR"
FT /mol_type="genomic RNA"
FT /country="Israel"
FT /db_xref="taxon:11987"
FT CDS 88. .2463
FT /codon_start=1
FT /transl_except=(pos:892. .894,aa:OTHER)
FT /product="putative RNA-dependent RNA polymerase"
FT /note="produced by a readthrough of the amber codon;
FT replicase; 89K protein"
FT /protein_id="ABJ53276.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCCKIAKVATIVGIGYLGVRIGAAWCRRTPGIINSIITYGEEVVEQVKVDIDE
FT DAEEESDIGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLTHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS
FT VRRGTHPDMTEFSQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND
FT RKELEPAPKPLSGAFDRLTWFRRKLHNIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL
FT EGLSVQRRDAYLKTFVKAEKINTTKKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG
FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALKWEHSVY
FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH
FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEIFEQIE
FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGINHARKWVNAVGLCGLSLTGGIPV
FT VQSYYNMTIRNTQSVNSSGILRDVSFASGFRELARLGNRKCGAISEDARFSFYLAFGIT
FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL"
FT CDS 88. .894
FT /codon_start=1
FT /product="29K protein"
FT /protein_id="ABJ53277.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCCKIAKVATIVGIGYLGVRIGAAWCRRTPGIINSIITYGEEVVEQVKVDIDE
FT DAEEESDIGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLTHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN"
FT CDS 2442. .2828
FT /codon_start=1
FT /transl_except=(pos:2637. .2639,aa:OTHER)
FT /product="14K protein"
FT /note="produced by a readthrough of the amber codon"
FT /protein_id="ABJ53281.1"
FT /translation="MDPQRTVEQTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG
FT VMGASTYIADKIKVTINFNFXCMACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGN
FT TYVHHFDNSSVKTQYVGISTNGDG"
FT CDS 2442. .2639
FT /codon_start=1
FT /product="p7A protein"
FT /protein_id="ABJ53279.1"
FT /translation="MDPQRTVEQTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG
FT VMGASTYIADKIKVTINFNF"
FT CDS 2643. .2828
FT /codon_start=1
FT /product="p7B protein"
FT /protein_id="ABJ53280.1"
FT /translation="MACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDN
FT SSVKTQYVGISTNGDG"
FT CDS 2815. .3987
FT /codon_start=1
FT /product="coat protein"
FT /note="42K protein"
FT /protein_id="ABJ53278.1"
FT /translation="MAMVRRINNLPTVKLAKQALPLLTNPKIANKAIDVVPLVVQGGQK
FT LSKAAKRLLGAYGGNISFTEGARPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI
FT ASVLPSNDLTVNNGDVNVGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGS
FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSAPWAENVLVVPCDNTWRYMNDTNAV
FT DRKLVDIGQFLFATYSGAGNTAHGDLYVEYAVEFKDPQPIAGMVCMFDRSVSSSEVGST
FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLIFAGNSKLVGNSLNVS
FT SSGASVLTFTLNSSGVPNSSDSSFSVGTVVALTRVRVTITRCSPETAYLA"
XX
SQ Sequence 4266 BP; 1083 A; 890 C; 1048 G; 1245 T; 0 other;
dq922807 Length: 4266 19-OCT-2006 Type: N Check: 1846 ..
1 ggattactct agccggatcc ccgactctct tatttttgta agttagttcg
51 tatattgatt atctatcttg atcaatatag gttagcaatg gatactggtt
101 tgaaatttct tgtttctgga ggtttagcca cctcatctgt tatcaggaaa
151 gtgagtgctg tgagttcatt ggattcgtcc cttccttcat catctatatt
201 atctgccatc catgggtctt ggactagtgc tatcagccac gattgttgta
251 aaatcgccaa ggttgccacc atagttggta ttggttatct tggggttagg
301 attggtgccg cttggtgccg tcgtactccc gggataataa attccataat
351 cacctatggg gaagaagtgg ttgagcaagt gaaggtggat attgatgaag
401 atgctgaaga ggagtccgat attggtgagg aaattgtggt tggtacgata
451 ggtattggta tacacacgaa cgtcaaccca gaagttcgag ctaagcgcag
501 acatagatcg aggccattca ttaagaagat tgtgaattta acgaagaatc
551 acttcggtgg gtgccccgac tccagcaaat cgaacgtcat ggctgtaagc
601 aaattcgttt atgaacaatg caagcagcac aattgtcttc cacatcaaac
651 gagattgatc atgagtgttg cagttccatt ggtgctaagt cccgatatgt
701 acgacatttc cagcaaagct ctgctaaaca gcgagatatt gacagaaaac
751 agagctacgc tggaccgcct caaaactctt gatgggtggt tgacacattt
801 ggtgtgccat ccccttagcg cgaaggcttg gaggcgggca attgacaact
851 tgtgtggtct tccagattgg aaggctttca agttggtcaa ctaggggtgc
901 ctagaggaac tcgctgggtt ctgtacttcg gtacggagag ggacacaccc
951 agacatgacc gagttttctc aggatcgtcc tattaagaca cgcaaactgt
1001 attgtttagg gggagttgga actagcgtga agttcaatgt gcacaataac
1051 tccctagcta accttcggcg cggtctaatt gaacgcgttt tctttgttga
1101 aaatgatagg aaggaactag agcctgcccc taaacctctt agtggtgctt
1151 ttgatcgctt aacttggttt cgtcggaaac ttcataatat tgtgggtact
1201 cattccagta ttagtccagg tcaattcttg gacttctata ctggcaggag
1251 gcgcacgatc tatgaaggtg ctgtgaaatc attggagggg ttaagtgttc
1301 aacgaaggga tgcctatctg aaaacgtttg ttaaggcgga gaagattaac
1351 accactaaga agcctgaccc agctccgcgg gtcatacaac cgaggaacgt
1401 aagatataat gttgaggttg gtcgttatct acgtaggttt gagcattacc
1451 tctatcgagg aattgacgaa atctggaatg gccccactat aataaaagga
1501 tacactgtcg agcaaattgg gaaaatcgcc cgtgacgctt gggactcatt
1551 cgttagtcct gtagcaatcg ggtttgatat gaaaaggttc gaccaacatg
1601 tatcctccga tgctcttaaa tgggaacata gtgtttatct tgatgctttt
1651 tgccacgact catatctcgc agaattgtta gagtggcaat tagtcaataa
1701 gggtgtcggg tatgctagtg atggaatgat taaatataag gttgatgggt
1751 gccggatgag cggtgacatg aatacagcta tgggtaactg tttgatcgcc
1801 tgtgctatta cgcatgattt cttccgtagt cgtggtatca gagcgcgttt
1851 gatgaacaat ggtgatgact gtgtcgtaat atgtgaaaaa gaatgtgccg
1901 cggtggttaa agccgacatg gtaaggcact ggagacaatt cgggtttcaa
1951 tgcgaactcg agtgcgacgc agaaattttc gagcagattg aattttgtca
2001 aatgcggcct gtgtacgacg gggagaaata tgtgatggtg cggaatcctt
2051 tggttagcct atctaaagat tcctactcag tcggcccttg gaatggaatc
2101 aaccatgcac gcaagtgggt caacgcagtt ggcttgtgtg gcttatccct
2151 cactggtgga attcctgttg tccagagtta ttataacatg acgatccgca
2201 acacccaatc cgtaaatagt tctggcatac tacgcgatgt cagtttcgct
2251 agcggatttc gggaattagc gcgattgggt aacaggaaat gtggtgccat
2301 atcagaagac gcccgtttta gcttttatct cgcatttggc attactccag
2351 atttacaacg tgccatggaa agtgactatg atgctcatac tatagagtgg
2401 ggttttgtac cccagggaaa tcctagaata cagccaatct catggaccct
2451 caacgaactg tagaacaaac taatcctcgt ggaagaagta aagaacgtgg
2501 tgatagcggg ggaaaacaga agaactcaat ggggcgaaag atagccaatg
2551 atgctatctc tgaatcgaag caaggagtta tgggtgctag tacatacatt
2601 gctgataaaa ttaaggtgac tatcaacttt aatttttagt gtatggcttg
2651 ctaccgttgc gactccagcc ccggggatta ctccggagca ttgcttatat
2701 tatttatctc atttgttttc ttttatatta cctcgcttag cccgcaagga
2751 aatacttacg ttcatcactt cgataattct tccgttaaaa cacaatacgt
2801 tggcatctct acaaatggcg atggttagac gcattaataa tttacccaca
2851 gtgaagcttg ctaagcaggc tctacccctg ctaacgaatc ctaaaattgc
2901 aaataaagct atagatgtgg ttcctctggt cgtccaaggt ggtcagaaat
2951 tgtccaaggc tgctaagcga ttgctcggcg cttatggagg taatatttcg
3001 ttcactgagg gtgccagacc aggcgcaata tcagctcctg tcgctattag
3051 tcggcgagtg gctggcatga agcctaggtt cgtccgatca gaaggatctg
3101 tgaagatagt tcacagggag tttattgctt ctgttcttcc ttcgaatgat
3151 ctcactgtta ataacggtga tgtcaacgtt ggtaagtaca gggtcaatcc
3201 cagtaataac gctttattta catggcttca gggacaagca caactatatg
3251 atatgtacag atttactcgg ctccgtttca cctacattcc tactaccgga
3301 tcaacttcta cgggtcgtgt ctctatcctt tgggatagag attctcagga
3351 ccccctcccc attgatcgtg cagccattag ctcttatgct cattacgctg
3401 attcagcgcc ttgggctgag aatgttctag tggttccttg tgacaatacg
3451 tggaggtaca tgaatgatac caatgccgtc gaccggaagt tggttgatat
3501 tgggcagttc cttttcgcta cttattctgg tgctggtaac accgcccatg
3551 gtgatcttta cgtcgagtat gctgtagaat ttaaggaccc ccagcctatc
3601 gctggtatgg tatgcatgtt tgatcgctct gtctcttcct ctgaagttgg
3651 atccactatt aagggagtca attatattgc tgatcgtgat gtgataacca
3701 ctggaggcaa tattggtgtt aacatcaata ttcccgggac ctatctcgtc
3751 acgattgttc ttaatgccac atcgattggt tccctcatct tcgctggtaa
3801 ttctaaactt gtaggcaaca gtcttaatgt ttccagcagt ggtgcatctg
3851 ttcttacgtt tacccttaat tcctctggtg tgcccaacag tagtgattct
3901 tcattctctg tgggtaccgt tgttgcattg actagggtgc gcgtaacaat
3951 cactcgctgc tctccagaaa ctgcctacct cgcctaattc gattaatgta
4001 ctccaaaaat tggcctccct tattcctacc cgttctcagc cagatctctg
4051 ttctggtgtc ctacaggcgt tcatgtcgtg tgtagtgcgg tctggctaac
4101 cgtaacggcg tatcggcttg gatttccaat gattaggctc caggatgtac
4151 gacatagttg aagatggatg gagtttggta gaccaccgct agcaaaatac
4201 actctgtgtg gggcgtgcta gtggatagtc atgtatgtct gagatgggtt
4251 ataggccatc ccgccc