Sequence of DPV Sugarcane mosaic virus

Sugarcane mosaic virus isolate SCMV-VN/SC4 polyprotein gene, partial cds.

ACC No: DQ925428

Dated: 2008-03-06 | Length: 1807 | CRC: 442226228

                
ID   DQ925428; SV 1; linear; genomic RNA; STD; VRL; 1807 BP.
XX
AC   DQ925428;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus isolate SCMV-VN/SC4 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1807
RX   DOI; 10.1007/s00705-007-1067-1
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1807
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1807
FT                   /organism="Sugarcane mosaic virus"
FT                   /specific_host="Sugarcane (Saccharum officinarum)"
FT                   /isolate="SCMV-VN/SC4"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hanoi"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /virion
FT                   /note="sample 1174"
FT                   /db_xref="taxon:12224"
FT   CDS             <1. .1552
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP30"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP30"
FT                   /protein_id="ABL09403.1"
FT                   /translation="DNTLMVILAFNYAMLSSGVQEDEIDNCCRMFANGDDLLLAVHPDF
FT                   EYILDGFTNHFSNLGLNFDFTSRTRDKSDLWFMSTRGIKCENIYIPKLEKERIVAILEW
FT                   DRSNLPEHRLEAICAAMVEAWGYQDLIHEIRKFYAWLLEMQPFANLAKGGLAPYIAETA
FT                   LRNLYIGAGIKEEEIEKYYKQFAKDLPGYLEDFNEDVFHQAGTVDAGATGGGTTGSGNP
FT                   PSTGGVTAPAASGTPPATGAAATAIGSAQPASGGSPPSTGSGSGSQADANSANAQKDKD
FT                   VDAGTTGTLSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDISNTRATREEFDR
FT                   WYEAIQREYEINDTQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQRVFPLKPVIEN
FT                   ASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRDLTDYSLARYAFDFYEMTSRTP
FT                   ARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1. .610
FT                   /product="NIb"
FT   mat_peptide     611. .1549
FT                   /product="CP"
FT   3'UTR           1553. .1807
XX
SQ   Sequence 1807 BP; 547 A; 382 C; 437 G; 441 T; 0 other;

dq925428 Length: 1807  06-MAR-2008  Type: N  Check: 6522  ..

       1  tgataataca ctaatggtaa tcctagcttt taactacgct atgttgtcga
      51  gtggagtcca agaagacgag atcgacaatt gttgtagaat gtttgcaaac
     101  ggtgacgatt tactcctagc agtgcatcct gatttcgagt acattttaga
     151  tgggtttacg aatcacttca gtaacctcgg tttaaacttc gatttcacat
     201  ctcgaacaag agataaatct gatttgtggt tcatgtcaac aagagggatt
     251  aaatgcgaaa acatctacat acccaaactt gagaaggagc gtatagttgc
     301  catacttgaa tgggatcgat caaatttacc tgaacatcga cttgaagcga
     351  tttgcgcagc tatggtggaa gcatggggtt accaagatct tattcatgag
     401  atccggaaat tttacgcatg gctgcttgaa atgcaaccct ttgccaatct
     451  tgctaaaggt ggcttggctc catacattgc agaaacagct ttgcgcaatt
     501  tgtacattgg agcaggcata aaggaagagg agatcgaaaa atattacaaa
     551  caatttgcca aagatctacc aggatatttg gaggatttta atgaagatgt
     601  tttccatcaa gcaggcaccg tcgatgctgg tgcaacggga ggtggtacaa
     651  ctggttctgg aaatccacct tcgacaggtg gtgtaacggc acccgcagcg
     701  agtggaactc caccagcaac tggagcagca gcaaccgcca taggttctgc
     751  acaacctgct tcaggaggaa gtcccccatc aactggatcg ggatctggat
     801  cacaggctga tgcaaattca gcaaacgcac agaaagataa ggacgtggat
     851  gctggcacaa caggaacact atcagtgcca aagctcaaag ccatgtcaaa
     901  gaaaatgcga ttacccaaag caaagggtag tgatatcttg catctggact
     951  ttctactcaa gtacaaacca caacagcaag atatatcgaa cacgagagca
    1001  accagagaag agttcgatag atggtacgaa gccatacaaa gagaatatga
    1051  gattaatgat acacaaatga aaatcattat gagtggtctc atggtatggt
    1101  gcattgaaaa cggttgctca ccaaacataa acggaagttg gaccatgatg
    1151  gatggggacg aacaaagagt cttcccattg aaaccagtca ttgaaaacgc
    1201  atctccaact ttccgacaaa taatgcatca ttttagtgat gcagctgaag
    1251  cgtatataga gtaccgaaac tctacagagc gatacatgcc aagatacggt
    1301  cttcagcgag atctcaccga ctatagctta gcacggtatg cttttgactt
    1351  ctatgaaatg acttcacgca caccagctag agctaaggaa gcccacatgc
    1401  agatgaaagc cgcagcagtt cgtggttcaa acacacgtct gttcggtctg
    1451  gacggaaatg tcggcgagac ccaggagaat acagagagac acacagctgg
    1501  cgacgttagt cgtaatatgc actctctgtt gggagtgcag cagcaccact
    1551  agtctcctgg aaaccctgtt tgcagtacct atagtatatt actaaatagt
    1601  atgcttgtga ggctctgccc cgcgtgtatg tgaggttgta cctcgtattt
    1651  actatttcag tatatgtact ttaagcgtgg gccagtctgc aggacacagg
    1701  gttggaccca gtgtcttctg gtgtagcgtg tactagcgtc gagccaatgg
    1751  acggacggca ctgggagtgg ttttaccatt ggtgctgcga gtctcttggt
    1801  gagagac