Sequence of DPV Potato virus Y

Potato virus Y isolate PVY-VN/P1 polyprotein gene, partial cds.

ACC No: DQ925435

Dated: 2008-03-06 | Length: 1739 | CRC: 39206182

                
ID   DQ925435; SV 1; linear; genomic RNA; STD; VRL; 1739 BP.
XX
AC   DQ925435;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Potato virus Y isolate PVY-VN/P1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1739
RX   DOI; 10.1007/s00705-007-1067-1
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1739
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1739
FT                   /organism="Potato virus Y"
FT                   /specific_host="Potato (Solanum tuberosum)"
FT                   /isolate="PVY-VN/P1"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Dalat"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /virion
FT                   /note="sample 1067"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .1411
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP37"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP37"
FT                   /protein_id="ABL09410.1"
FT                   /translation="DNSLMVVLAMHYALIKECIDFEEIDSTCVFFVNGDDLLIAVNPDK
FT                   EGILDRLSQHFSDLGLNYDFSSRTRNKEELWFMSHRGLLIEGMYVPKLEEERIVSILQW
FT                   DRADLAEHRLEAICAAMIESWGYSELTHQIRRFYSWLLQQQPFATIAQEGKAPYIASMA
FT                   LRKLYMDRAVDEEELRAFTEMMVALDDEFEFDSYEVYHQANDTIDAGGSSKKDARPEQG
FT                   SIQSNPNKGKDKDVNAGTSGTHTVPRIKAITSKMRMPKGKGATVLNLEHLLEYAPQQID
FT                   ISNTRATQSQFDTWYEAVRMAYDIGETEMPTVMNGLMVWCIENGTSPNVNGVWVMMDGN
FT                   EQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLIRNLRDVGLAR
FT                   YAFDFYEVTSRTPVRAREAHIQMKAAALKSAQPRLFGLDGGISTQEENTERHTTEDVSP
FT                   SMHTLLGVKNM"
FT   mat_peptide     <1. .607
FT                   /product="NIb"
FT   mat_peptide     608. .1408
FT                   /product="CP"
FT   3'UTR           1412. .1739
XX
SQ   Sequence 1739 BP; 522 A; 318 C; 434 G; 465 T; 0 other;

dq925435 Length: 1739  06-MAR-2008  Type: N  Check: 5506  ..

       1  ggacaactct cttatggtcg tccttgccat gcactatgct ctcatcaaag
      51  aatgcattga ttttgaagag attgacagca cgtgcgtgtt ctttgtcaat
     101  ggtgatgatt tgctgattgc tgtgaatccg gataaagagg gcattcttga
     151  cagattgtca caacacttct cagatcttgg tttgaattat gatttctcgt
     201  caagaacaag aaataaggag gagttgtggt ttatgtctca tagaggccta
     251  ctgattgagg gcatgtacgt gccgaaactt gaagaagaaa ggattgtgtc
     301  cattctccaa tgggacagag cagacttggc tgaacatagg cttgaggcga
     351  tttgcgcagc tatgatagag tcctggggtt attctgaatt aacacaccaa
     401  atcaggagat tctactcatg gttattgcaa cagcaaccct ttgccacaat
     451  agcgcaggaa gggaaggctc cttatatagc aagcatggca ttaaggaaat
     501  tgtatatgga tagggctgtg gatgaggaag agctgagagc cttcactgaa
     551  atgatggtcg cattagacga tgagtttgaa tttgactctt atgaagtata
     601  tcatcaagca aatgacacaa tcgatgcagg aggaagcagc aagaaagatg
     651  caagaccaga gcagggcagc atccagtcaa acccgaacaa aggaaaagat
     701  aaagatgtga atgctggtac atctgggaca catactgtgc caagaatcaa
     751  ggctatcacg tccaaaatga gaatgcccaa aggcaaggga gcaaccgtgc
     801  taaacttaga acacttgctt gagtatgctc cacaacaaat tgatatttca
     851  aatactcggg caactcaatc acagtttgat acgtggtatg aggcagtgcg
     901  gatggcatac gacataggag aaactgagat gccaactgtg atgaatgggc
     951  ttatggtttg gtgcattgaa aatgggacct cgccaaatgt caacggagtt
    1001  tgggttatga tggatggaaa tgaacaagtc gagtacccgt tgaaaccaat
    1051  cgttgagaat gcaaaaccaa cccttaggca aatcatggca catttctcag
    1101  atgttgcaga agcgtatata gaaatgcgca acaaaaagga accatatatg
    1151  ccacgatatg gtttaattcg aaatctgcgg gatgtgggtt tagcgcgcta
    1201  tgccttcgac ttttatgagg tcacatcacg aacaccagtg agggctaggg
    1251  aagcgcacat tcaaatgaag gccgcagcat tgaaatcagc ccaacctcga
    1301  cttttcgggt tggacggtgg catcagtaca caagaggaga acacagagag
    1351  gcacaccacc gaggatgtct ctccaagtat gcatactcta cttggagtca
    1401  agaacatgtg atgtagtgtc tctccggacg atatataagt atttacatat
    1451  gcagtaagta ttttggcttt tcctgtacta cttttatcat aattaataat
    1501  cagtttgaat attactaata gatagaggtg gcagggtgat ttcgtcattg
    1551  tggtgactct atcttttaat tccgcattat taagtcttag ataaaagtgc
    1601  cgggttgtcg ttgttgtgga tgattcatcg attaggtgat gttgcgattc
    1651  tgtcgtagca gtgactatgt ctggatctat ctgcttgggt ggtgttgtga
    1701  ttttgtcata acagtgactg taaacttcaa tcaggagac