Sequence of DPV Potato virus Y

Potato virus Y isolate PVY-VN/C10 polyprotein gene, partial cds.

ACC No: DQ925436

Dated: 2008-03-06 | Length: 1739 | CRC: 855003360

                
ID   DQ925436; SV 1; linear; genomic RNA; STD; VRL; 1739 BP.
XX
AC   DQ925436;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Potato virus Y isolate PVY-VN/C10 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1739
RX   DOI; 10.1007/s00705-007-1067-1
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1739
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1739
FT                   /organism="Potato virus Y"
FT                   /specific_host="Chilli (Capsicum annuum)"
FT                   /isolate="PVY-VN/C10"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Dalat"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /virion
FT                   /note="sample 1074"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .1411
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP38"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP38"
FT                   /protein_id="ABL09411.1"
FT                   /translation="DNSLMVVLAMHYALIKECVDFEEIDNTCVFFVNGDDLIIAVNPEK
FT                   ESILDRLSQHFSDLGLNYDFSSRTRNKEELWFMSHRGLLIEGMYVPKLEEERIVSILQW
FT                   DRADLAEHRLEAICAAMIESWGYSELTHQIRRFYSWLLQQQPFAAIAQEGKAPYIASMA
FT                   LRKLYMDRAVDEEELRAFTEMMVALDDEFECDSYEVHHQANDPIDAGENNKKDAKPAQG
FT                   SIQPSPNKGKDKDVNAGTSGTHTVPRIKAITSKMRMPKSKGTAVLNLEHLLEYAPQQID
FT                   ISNTRATQSQFDTWYEAVRMAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGS
FT                   EQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLIRNLRDISLAR
FT                   YAFDFYEVTSRTPVWAREAHIQVKAAALKSAQPRLFGLDGGISTQEENTERHTTEDVSP
FT                   SMHTLLGVKNM"
FT   mat_peptide     <1. .607
FT                   /product="NIb"
FT   mat_peptide     608. .1408
FT                   /product="CP"
XX
SQ   Sequence 1739 BP; 530 A; 318 C; 432 G; 459 T; 0 other;

dq925436 Length: 1739  06-MAR-2008  Type: N  Check: 2125  ..

       1  ggataactct cttatggttg ttctcgccat gcattacgcc ctcattaagg
      51  agtgtgttga ctttgaagag attgacaaca catgtgtgtt ctttgtcaac
     101  ggcgatgatt taataattgc cgtaaatcca gaaaaggaga gcattcttga
     151  caggttgtca caacacttct cagatcttgg tttaaattat gatttctcgt
     201  caaggacaag aaataaagag gagttgtggt ttatgtccca tagaggcttg
     251  ttaattgagg gcatgtacgt gccgaaactt gaagaagaaa gaattgtatc
     301  tattctacaa tgggacaggg cagatttggc tgaacacagg ctcgaagcaa
     351  tctgcgcagc tatgatagag tcatggggtt attctgaatt aacacaccag
     401  atcaggagat tttactcatg gttgttgcag caacaacctt tcgcagcaat
     451  agcgcaggaa ggaaaagctc cctacatagc aagcatggca ttgaggaaac
     501  tgtacatgga tagagcagtg gacgaggagg aactaagagc cttcactgaa
     551  atgatggttg cattggatga tgagtttgag tgtgattcct atgaagtaca
     601  tcaccaggca aatgacccga ttgatgctgg ggagaataat aagaaagatg
     651  cgaagccagc acagggtagc atccagccaa gtcctaacaa agggaaggat
     701  aaggacgtga atgccggtac atctggaaca catactgtgc caagaataaa
     751  ggctattacg tcaaaaatga gaatgcctaa gagcaaagga acagccgtgc
     801  taaacttaga acacttactc gagtatgctc cacaacagat agacatctca
     851  aatactcggg cgactcaatc acagtttgat acgtggtatg aagcagtgcg
     901  gatggcatac gacatagggg aaactgaaat gccaactgtg atgaatgggc
     951  ttatggtttg gtgcattgaa aatggaacct cgccaaatat caacggagtt
    1001  tgggttatga tggatggaag tgaacaagtt gaatacccgt tgaaaccaat
    1051  cgttgagaat gcaaaaccga cccttaggca aatcatggca catttctcag
    1101  atgttgcaga ggcgtatata gagatgcgca acaagaagga accatatatg
    1151  ccacgatatg gtttaatccg aaatctgcgg gatataagtc tagcgcgcta
    1201  tgcctttgac ttttatgagg tcacatcacg aacaccagtg tgggctaggg
    1251  aagcgcacat tcaagtgaag gccgcagcat tgaaatcagc ccaacctcga
    1301  cttttcgggt tggacggtgg catcagtaca caagaggaga acacagagag
    1351  acacaccacc gaggatgtct ctccaagtat gcatactcta cttggagtca
    1401  agaacatgtg atgtagtgtc tctccggacg atatataagt atttacatat
    1451  gcagtaagta ttttggcttt tcctgtacta cttttattat aattaataat
    1501  cagtttgaat attactaata gatggaggtg gcaaggtgat ttcgtcattg
    1551  tggtgactct atctgttaat tccgcattat taagtcttag ataaaagtgc
    1601  cgggttgtcg ttgttgtgga tgattcatcg actaggtgat gttgcgattc
    1651  tgtcgtagca gtgactatgt ctggatctat ctacttgggt ggtgttgtga
    1701  tttcgtcata acagtgactg taaacttcaa tcaggagac