Sequence of DPV Chilli veinal mottle virus

Chilli veinal mottle virus isolate ChiVMV-VN/C3 polyprotein gene, partial cds.

ACC No: DQ925442

Dated: 2008-03-06 | Length: 1757 | CRC: -641098479

                
ID   DQ925442; SV 1; linear; genomic RNA; STD; VRL; 1757 BP.
XX
AC   DQ925442;
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DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
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DE   Chilli veinal mottle virus isolate ChiVMV-VN/C3 polyprotein gene, partial
DE   cds.
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KW   .
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OS   Chilli veinal mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1757
RX   DOI; 10.1007/s00705-007-1067-1
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
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RN   [2]
RP   1-1757
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1757
FT                   /organism="Chilli veinal mottle virus"
FT                   /specific_host="Chilli (Capsicum annuum)"
FT                   /isolate="ChiVMV-VN/C3"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hanoi"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2000"
FT                   /virion
FT                   /note="sample 549"
FT                   /db_xref="taxon:52280"
FT   CDS             <1. .1474
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP44"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP44"
FT                   /protein_id="ABL09417.1"
FT                   /translation="DNTLMVLVAMRYSLRRLGINYEDQNDRCVFFANGDDLIVSVPSSD
FT                   EWILDSLQEPFLELGLSYDFNERTRERSELWFMSHRGILIENQYVPKLEPERIVSILEW
FT                   DRADQPEHRLEAICASMIEAWGYKELLHEIRLFYKWVIEQAPYSQLVSEGKAPYISETA
FT                   LRCLYMSEHGESDISPYLRALIEGAKKEELDGEGGEVTHQSGESVDAGRVKGEDSSSKP
FT                   SDRQAAEKKNKVSGQAQPQSRRSEMEVPQVRDRDVNVGTSGTFTIPRLKGISSKLTIPK
FT                   IKTKAVVNLEHLLDYAPEQIHLSNTRALQSQFASWYEGVKSDYDVTDEQMQIILNGLMV
FT                   WCIENGTSPNINGYWVMMDGDEQVEYPIKPLIDHAKPSFRQIMAHFSNLAEAYIEKRNS
FT                   EKPYMPRYGLQRNLTDMSLARYAFDFYEMTSKTPVRAREAHIQMKAAALRGVSNRMFGL
FT                   DGRVGTQEEDTERHTAEDVNRSMHNLLGVRGL"
FT   mat_peptide     <1. .610
FT                   /product="NIb"
FT   mat_peptide     611. .1471
FT                   /product="CP"
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SQ   Sequence 1757 BP; 545 A; 331 C; 421 G; 460 T; 0 other;

dq925442 Length: 1757  06-MAR-2008  Type: N  Check: 2850  ..

       1  ggataataca cttatggtgc tggtagcaat gagatactcg ttgcgtcggc
      51  taggcattaa ctacgaagat cagaacgaca gatgtgtttt ctttgctaat
     101  ggtgatgatt tgatcgtctc agtgccatca agtgacgagt ggatattgga
     151  ttccttgcag gaaccattct tagaattagg cctgtcatat gattttaatg
     201  agcggacgag agaaagatcg gaactctggt ttatgtccca ccgaggaata
     251  ctaattgaga atcaatatgt tccaaagctt gagcctgagc gcatagtttc
     301  aattctcgaa tgggacagag ctgaccaacc agaacaccga cttgaagcca
     351  tttgcgcatc tatgatcgag gcatggggtt acaaagaact gttacatgag
     401  ataaggctct tctataagtg ggtgattgag caagcaccat actcacaact
     451  tgtctctgag gggaaggcac catacatttc agaaacagca ttgaggtgcc
     501  tctacatgag tgaacatgga gaaagtgaca tcagcccgta tctgagagca
     551  cttattgaag gagctaagaa ggaagaatta gatggtgagg gtggagaagt
     601  cacacatcag tcgggagaga gtgttgatgc tggaagagtg aagggtgaag
     651  attcttcgag caaaccatcc gacagacaag ccgcagagaa gaagaacaaa
     701  gtgagtggac aagcccagcc acagtctcgt cggagtgaaa tggaagtacc
     751  ccaagttcga gacagagatg tcaatgttgg gacctcaggg acattcacaa
     801  taccgcgcct caagggcatt tcttcaaagt taacaatacc aaagatcaaa
     851  acaaaggcag ttgttaacct tgaacacctt cttgattatg cccctgaaca
     901  gatacatttg agtaatacaa gggcactgca atcacaattt gcatcctggt
     951  atgaaggtgt taagagtgac tatgatgtca cagatgaaca gatgcaaata
    1001  atactgaatg gattgatggt ttggtgtatt gaaaatggaa cgtcaccaaa
    1051  cattaatggt tattgggtta tgatggatgg agatgaacaa gttgaatatc
    1101  caataaaacc attgattgat cacgccaaac catcatttag acaaatcatg
    1151  gcgcatttta gcaaccttgc tgaagcgtac attgagaagc gcaactctga
    1201  gaagccatat atgccaagat atgggcttca aagaaacctt accgatatgt
    1251  cattagcgcg atatgctttc gatttctatg aaatgacatc gaaaactccc
    1301  gttcgagctc gtgaagcaca cattcaaatg aaggcagctg cattacgcgg
    1351  cgttagcaac aggatgttcg gactggacgg tagggtaggc acacaggaag
    1401  aagacaccga acgccataca gcagaggatg tgaatagaag tatgcataat
    1451  ctactgggtg ttcgaggctt gtgatatctt cagcttttaa ctagtaataa
    1501  gtaacatatt gtagtatatg taacttggtt tatattgtcg atcatgcata
    1551  ttcttcagtg tggttcccac cataagttat gtatgcttaa cttcatacta
    1601  ctttatatat atgttattta acacttttta tctaggcaac tgtgtacccc
    1651  cgcccattct agtgtggttc ccaccttagt aggatggtgc aacaaagact
    1701  atcgttatgg tttaaggagg tgactctatg ggtcgttcaa gctattcaat
    1751  agtggcg