Sequence of DPV Chilli veinal mottle virus

Chilli veinal mottle virus isolate ChiVMV-VN/C6 polyprotein gene, partial cds.

ACC No: DQ925446

Dated: 2008-03-06 | Length: 1757 | CRC: -908736149

                
ID   DQ925446; SV 1; linear; genomic RNA; STD; VRL; 1757 BP.
XX
AC   DQ925446;
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DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
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DE   Chilli veinal mottle virus isolate ChiVMV-VN/C6 polyprotein gene, partial
DE   cds.
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KW   .
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OS   Chilli veinal mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1757
RX   DOI; 10.1007/s00705-007-1067-1
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
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RN   [2]
RP   1-1757
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1757
FT                   /organism="Chilli veinal mottle virus"
FT                   /specific_host="Chilli (Capsicum annuum)"
FT                   /isolate="ChiVMV-VN/C6"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Vinhphuc"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /virion
FT                   /note="sample 1155"
FT                   /db_xref="taxon:52280"
FT   CDS             <1. .1474
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP48"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP48"
FT                   /protein_id="ABL09421.1"
FT                   /translation="DNTLMVLIAMRYSLRRLGINYEDQNNRCVFFANGDDLIVSVPPSD
FT                   EWILDSLQEPFSELGLSYGFSERTRERSELWFMSHQGILIDDQYVPKLEPERIVSILEW
FT                   DRAEQPEHRLEAICASMIEAWGYKELLHEIRLFYKWVIEQAPYSQLVSEGKAPYISETA
FT                   LRCLYMSEHGESDISLYLRALIKGAKEEGLDDEGGEVAHQSGESVDAGRVKGEDSSSKP
FT                   ADKQATEKKNKTGGQAQPHTRQSEMEVPQVRDRDVNVGTSGTFTIPRLKGISSKLTIPK
FT                   IKTKAVVNLEHLLDYAPEQIHLSNTRALQSQFASWYEGVKNDYDVTDEQMQIILNGLMV
FT                   WCIENGTSPNINGYWVMMDGDEQVEYPIKPLIDHAKPSFRQIMAHFSNLAEAYIEKRNS
FT                   EKPYMPRYGLQRNLTDMSLARYAFDFYEITSKTPVRAREAHIQMKAAALRGVSNRMFGL
FT                   DGRVGTQEEDTERHTAEDVNRNMHNLLGVRGL"
FT   mat_peptide     <1. .610
FT                   /product="NIb"
FT   mat_peptide     611. .1471
FT                   /product="CP"
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SQ   Sequence 1757 BP; 546 A; 327 C; 421 G; 463 T; 0 other;

dq925446 Length: 1757  06-MAR-2008  Type: N  Check: 1530  ..

       1  agataacaca ctcatggtgt tgatagcaat gagatactca ctacgtcggc
      51  taggcataaa ctatgaagat cagaacaata gatgtgtttt cttcgctaat
     101  ggcgatgatt taattgtttc agtgccaccg agcgacgagt ggatattgga
     151  ctccttgcaa gaaccattct cagagttggg cttgtcatat ggttttagtg
     201  agcggacaag agaaagatcg gaactctggt tcatgtccca tcaaggaata
     251  ctaattgatg atcaatatgt accaaagctt gagcctgagc gtatagtttc
     301  aattcttgaa tgggacagag ctgaacagcc agagcatcga cttgaagcta
     351  tttgtgcatc tatgattgaa gcgtggggtt acaaagaact gttacacgag
     401  ataaggcttt tctataagtg ggtgatcgag caagcgccat attcacaact
     451  tgtctctgaa ggaaaggcac catacatctc agaaacagca ttgaggtgcc
     501  tctacatgag tgagcatgga gagagtgaca tcagtctata tttgagagca
     551  ctcattaaag gggccaagga agaaggatta gatgacgagg gtggggaggt
     601  cgcccatcag tcaggggaaa gtgttgatgc tggaagagtt aagggtgaag
     651  attcatcgag taaaccagct gacaaacaag ctacagagaa gaagaataag
     701  acgggtgggc aagctcagcc acatactcgt caaagtgaga tggaagtacc
     751  ccaagttcga gacagagacg ttaatgttgg aacctcggga acattcacaa
     801  taccgcgtct taagggtatt tcttcaaagt taacaatacc aaaaatcaaa
     851  acaaaggctg ttgttaacct cgaacacctt cttgattatg cccctgaaca
     901  gatacatttg agtaacacaa gggcattaca atcacagttt gcatcctggt
     951  atgaaggtgt caagaatgac tatgatgtca cagatgaaca gatgcaaata
    1001  atattaaatg gattgatggt ttggtgcatt gagaatggaa cgtcaccaaa
    1051  cattaatggt tattgggtta tgatggatgg agatgagcaa gttgagtatc
    1101  cgataaaacc attgattgac catgctaaac catcatttag acaaatcatg
    1151  gcacacttta gcaatcttgc tgaagcgtac attgagaagc gcaattctga
    1201  gaagccatat atgccaagat atgggcttca aagaaacctt accgatatgt
    1251  cattagcgcg atatgctttc gatttctatg aaataacatc gaaaactccc
    1301  gttcgagctc gagaagcgca cattcaaatg aaggcagccg ctttacgtgg
    1351  tgtcagcaac aggatgttcg gactggacgg tagggtaggc acacaggagg
    1401  aggacaccga acgccacaca gcagaggatg tgaacagaaa tatgcacaac
    1451  ttgctgggtg ttcgtggatt gtaacatctt cagcttttaa ctagtaataa
    1501  ctaacatatt gtagtatatg taacttggtt tatgttgttg atcatacata
    1551  ttcttcagtg tggctcccac cataagttat gtatgcttag cctcatacta
    1601  ctttatatat atgttattta gtgcttttta tctaggtaac tgtgaacccc
    1651  cgcccattct agcgtggttc ccaccctaat agagtggagt aacaaagact
    1701  atcgttatgg tttacggagg tgactctgtg ggtcgttcaa gctattcaat
    1751  agtggcg