Sequence of DPV Shallot yellow stripe virus

Shallot yellow stripe virus isolate SYSV-VN/L1 polyprotein gene, partial cds.

ACC No: DQ925458

Dated: 2008-03-06 | Length: 1589 | CRC: -1795500621

                
ID   DQ925458; SV 1; linear; genomic RNA; STD; VRL; 1589 BP.
XX
AC   DQ925458;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
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DE   Shallot yellow stripe virus isolate SYSV-VN/L1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Shallot yellow stripe virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1589
RX   DOI; 10.1007/s00705-007-1067-1
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1589
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1589
FT                   /organism="Shallot yellow stripe virus"
FT                   /specific_host="Leek (Allium porrum)"
FT                   /isolate="SYSV-VN/L1"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Bacninh"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /virion
FT                   /note="sample 1226"
FT                   /db_xref="taxon:62059"
FT   CDS             <1. .1393
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP60"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP60"
FT                   /protein_id="ABL09433.1"
FT                   /translation="STVVDNTLMAMLGVQYTLLKNDVKFMEQDSIIRYFCNGDDLLLAI
FT                   HPDYIHILDSFTKHFADLGLEYDFSNRTTNREELYFMSHRGILRGEVYIPKLDKERVVS
FT                   ILEWDRAKEPEHRLEAICAAMVEAWGYDELLHEIRLFYQWVLEQAPYNLIAQTGKAPYI
FT                   AETALKRLYMDEQATESELERYSRLYQILDEQTPAPSYVSYQASELEDAASVNTDKQVG
FT                   KSKDKDKDVDVGTSGEFSVPKVKMLSDKMRLPRVGKKVILNGKHLLTYKPDQVDLYNTR
FT                   ATHAQFKTWYDAVKLEYELTDEQMKIVMNGLMVWCIENGTSQNLTGVWTMMDGDNQMEY
FT                   PLSPIIDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLREYSLARYAFDF
FT                   YEMNSKTPIRAKEAHMQMKAAAVRGVANRMFGLDGNISTDDENTERHTAADVNKDHHTL
FT                   LGLRM"
FT   mat_peptide     <1. .616
FT                   /product="NIb"
FT   mat_peptide     617. .1390
FT                   /product="CP"
FT   3'UTR           1394. .1589
XX
SQ   Sequence 1589 BP; 523 A; 288 C; 363 G; 415 T; 0 other;

dq925458 Length: 1589  06-MAR-2008  Type: N  Check: 6035  ..

       1  ttccacagtg gtggataaca cattgatggc tatgcttggt gtccaataca
      51  cgttattaaa gaacgatgtc aaattcatgg aacaagactc tattattcga
     101  tatttttgca atggtgatga tttactcctc gctatccatc cggattatat
     151  tcatatattg gactcattta caaagcactt tgccgatttg ggccttgaat
     201  acgatttttc aaaccgaacc acaaatcgag aggaattgta tttcatgtct
     251  catagaggca tacttagagg cgaagtttat atacctaaac tcgacaaaga
     301  acgtgtagtt tccatacttg aatgggacag agccaaagag cccgagcatc
     351  gattggaagc catctgtgcc gccatggtag aggcatgggg ctacgacgaa
     401  ctactacatg aaatcagact gttttatcag tgggtgttgg agcaagcacc
     451  gtataattta atagctcaaa caggaaaagc accatatatt gcagagacgg
     501  cattaaagag attgtacatg gacgagcaag caaccgaaag tgaattagag
     551  agatatagtc gactttacca aattttggat gagcaaacac cagcaccaag
     601  ctatgtttct taccaagcat ctgagttaga agacgctgca agcgtaaaca
     651  ctgataagca agttggaaag agtaaagaca aagataaaga tgttgatgtt
     701  ggcacatcag gcgagttctc tgtaccaaaa gtaaaaatgt tatcagataa
     751  gatgcgttta ccacgagttg ggaagaaggt gatacttaat gggaaacatt
     801  tgttgactta taagcctgat caagttgatc tatacaacac acgggcaaca
     851  catgcacaat ttaaaacgtg gtacgatgca gtcaaacttg aatacgaatt
     901  gacggacgaa caaatgaaaa tagttatgaa cggtttgatg gtgtggtgca
     951  tcgagaatgg cacatcacaa aatttaacgg gggtctggac gatgatggac
    1001  ggtgataacc aaatggagta tccacttagc ccgattattg ataatgcgaa
    1051  acccacattt agacaaataa tggcacactt cagtgacgca gctgaagcgt
    1101  acattgaata taggaatgcc acagaaaaat acatgccccg gtatggactt
    1151  cagcgaaatt taagagaata cagcttagca cgttacgcat tcgactttta
    1201  tgagatgaac tcaaagacgc cgatccgcgc gaaggaagct catatgcaga
    1251  tgaaagcggc agcggttaga ggggtagcta accgcatgtt tggcttggat
    1301  ggtaacataa gcaccgatga tgagaacaca gaacgacata cagcagctga
    1351  tgtgaataag gatcatcaca cgttgctcgg tcttcgtatg taataagcat
    1401  atgtatattt aatatatagt gtcgtgcatt atctttcgtt atatttgaat
    1451  atgagcaaac atagtgtggt tgtaccaccg tttgtggcat agtatatgat
    1501  ataacttcgc tagcattatt tgcaccatgg aatctagtgt ggtttcacca
    1551  cgaagaaagg ttacgtgttg tacattttac tagggagac