Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate TuMV-VN/Bj1 polyprotein gene, partial cds.

ACC No: DQ925460

Dated: 2008-03-06 | Length: 1677 | CRC: -1634002595

                
ID   DQ925460; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   DQ925460;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
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DE   Turnip mosaic virus isolate TuMV-VN/Bj1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1677
RX   DOI; 10.1007/s00705-007-1067-1
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1677
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1677
FT                   /organism="Turnip mosaic virus"
FT                   /specific_host="Chinese mustard (Brassica juncea)"
FT                   /isolate="TuMV-VN/Bj1"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Daklak"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /virion
FT                   /note="sample 1055"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .1468
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP62"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP62"
FT                   /protein_id="ABL09435.1"
FT                   /translation="DNTLMVILAVNYSLRKSGIPNELRDSIIRFFVNGDDLLLSVHPKY
FT                   EYVLDTMADNFCELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLEPERIVSILEW
FT                   DRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPYSSLAQEGKAPYIAETA
FT                   LRKLYLDKEPAQEDLTQYLQAIFEDYEDGAEVCVYHQAGETLDAGLTEEQKQAEKERKE
FT                   RERSEKERERQRQLALKKGKNAAQEEGERDKEVNAGTSGTFSVPRLKSLTSKMRVPKYE
FT                   QRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWC
FT                   IENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDR
FT                   PYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDG
FT                   NVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .601
FT                   /product="NIb"
FT   mat_peptide     602. .1465
FT                   /product="CP"
XX
SQ   Sequence 1677 BP; 535 A; 338 C; 418 G; 386 T; 0 other;

dq925460 Length: 1677  06-MAR-2008  Type: N  Check: 7376  ..

       1  ggacaacacg ctcatggtca tattagcagt caactactca ctcaggaaaa
      51  gtggaattcc aaatgaattg cgcgatagca tcatcagatt tttcgtcaat
     101  ggagatgact tgctgctaag cgtacatcca aagtacgagt atgtccttga
     151  taccatggcg gataatttct gtgaactggg cttgaagtat accttcgatt
     201  caagaaccag agaaaaaggt gacctttggt ttatgtcgca ccaaggacac
     251  aaaagagaag ggatctggat ccccaagctg gaaccagagc gaatagtatc
     301  gatcctagag tgggatcgat caaaagagcc atgccaccga cttgaggcaa
     351  tctgcgcagc aatgattgaa tcgtggggat atgataagtt gacccatgag
     401  atacgcaagt tttatgcatg gatgatcgaa caggctccat acagctctct
     451  agcacaagag ggaaaagctc cttacatagc ggaaacggca ctgaggaaac
     501  tttaccttga caaagaacca gctcaagaag atcttactca atacttacaa
     551  gcaatcttcg aagattacga agatggtgcc gaagtgtgtg tttatcacca
     601  ggcaggtgag acgcttgatg ccggtctaac agaagagcag aagcaggctg
     651  aaaaggagag aaaggagaga gagagatcag agaaagagcg agaaaggcaa
     701  agacagctag cgcttaagaa aggcaaaaac gcagcacaag aagagggcga
     751  acgcgacaag gaagtaaacg ctggaacctc tggaactttc agtgtaccca
     801  gacttaagag tctgacaagc aagatgcgcg tgccaaaata tgagcaaaga
     851  gtggctttaa acctcgatca cctaatccta tatacgccgg agcagacgga
     901  tctatccaac acacgttcaa cgcgaaagca gtttgacaca tggtttgaag
     951  gtgtaatggc tgattatgaa ctaacggagg acaaaatgca aatcattctc
    1001  aatggtttaa tggtctggtg cattgagaac ggaacctccc caaacataaa
    1051  cggaatgtgg gtgatgatgg acggcgatga tcaggtggaa ttcccgatca
    1101  aaccgctcat tgaccacgcc aaacccacat ttaggcagat aatggcccat
    1151  ttcagtgacg tagctgaagc gtacattgaa aagcgtaacc aagaccgacc
    1201  atacatgcca cgatatggtc ttcagcgcaa tttaaccgac atgagcttag
    1251  ctcgatacgc atttgatttc tatgaaatga cttctagaac tccaatacgt
    1301  gcgagagaag cacacatcca gatgaaagca gcagcactgc gtggcgcaaa
    1351  taacaatttg ttcggcttgg atggaaacgt tggtacaacg gtagagaaca
    1401  cggagaggca tacgaccgag gacgttaatc ggaacatgca taacttactt
    1451  ggcgttaagg ggttatgaag ttgtatgctg gtagactata agtatttaag
    1501  tttactcgtt agtattctcg cttatgggaa atatgtaagt ttgctaaagc
    1551  agccagtgtg acttcgtcat gtgtgttgtt gttactttct atgttttcgc
    1601  cgaacatttt attggtgtta gcgcatgttg tgaggatcat cctcgattgc
    1651  cttaacattt gataggatgc aagggac