Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus isolate SPFMV-VN/SP2 polyprotein gene, partial cds.
ACC No: DQ925468
Dated: 2008-03-06 | Length: 1781 | CRC: 765670957
ID DQ925468; SV 1; linear; genomic RNA; STD; VRL; 1781 BP.
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AC DQ925468;
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DT 30-JUN-2007 (Rel. 92, Created)
DT 06-MAR-2008 (Rel. 95, Last updated, Version 2)
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DE Sweet potato feathery mottle virus isolate SPFMV-VN/SP2 polyprotein gene,
DE partial cds.
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KW .
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OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1781
RX DOI; 10.1007/s00705-007-1067-1
RX PUBMED; 17906829.
RA Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT "Identification and sequence analysis of potyviruses infecting crops in
RT Vietnam";
RL Arch. Virol. 153(1):45-60(2008).
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RN [2]
RP 1-1781
RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT ;
RL Submitted (29-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL Institute of Health and Biomedical Innovation, Queensland University of
RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .1781
FT /organism="Sweet potato feathery mottle virus"
FT /specific_host="Sweet potato (Ipomoea batatas)"
FT /isolate="SPFMV-VN/SP2"
FT /mol_type="genomic RNA"
FT /country="Viet Nam:Bacgiang"
FT /isolation_source="infected plant"
FT /collection_date="2004"
FT /virion
FT /note="sample 1214"
FT /db_xref="taxon:12844"
FT CDS <1. .1561
FT /codon_start=2
FT /product="polyprotein"
FT /db_xref="GOA:A6XP70"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:A6XP70"
FT /protein_id="ABL09443.1"
FT /translation="DNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDT
FT AHLLDKFGECFSELGLNYDFSSRTNKKEDLWFMSHCGVRRDGIFIPKLEPERIVSILEW
FT DRSHEPIHRLEAICAAMVESWGYDELLHHIRKFYARVLDQAPYNELARNGKAPYIAETA
FT LKALYTGVQPNASELSAYTRVLKEMYDDSVLQENDLEVYHQSNESTEFKDAGANPPAPK
FT SKDIPPPPTITEITDPEDPKQAALKAARAKQPAVIPESYGRDTSKEKESIVGTSSKGVR
FT DKDVNVGTVGTFVVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQ
FT FQAWYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPL
FT LDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHS
FT TTPARAKEAHLQMKAAALKNAKNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRG
FT VQ"
FT mat_peptide <1. .613
FT /product="NIb"
FT mat_peptide 614. .1558
FT /product="CP"
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SQ Sequence 1781 BP; 557 A; 333 C; 422 G; 469 T; 0 other;
dq925468 Length: 1781 06-MAR-2008 Type: N Check: 1231 ..
1 tgataataca ctcatggttg tgttagcagt tcactacaca ctgctgaaac
51 taggaatcca agaaagcgag tttgacaaat gctgtgtctt tttcgcaaat
101 ggtgatgatt tattattggc aatgagacca gacacagccc atttactgga
151 taagtttggt gaatgtttct ctgagttagg actcaattat gacttttcat
201 cacgaacaaa taagaaagag gatctatggt ttatgtccca ctgtggtgtg
251 agacgtgatg gaatatttat tccgaagttg gagcctgaaa gaattgtctc
301 aattcttgaa tgggatcgtt cacacgagcc aattcatcga ttggaagcaa
351 tatgtgccgc gatggtggaa tcatggggtt atgatgaact tcttcatcat
401 attaggaaat tctatgcaag ggttttggat caagccccat acaatgaact
451 agcacggaat gggaaggcac catacatagc cgaaactgca ctcaaagcac
501 tctatactgg tgttcaaccc aatgcttccg aattgagtgc gtacacgaga
551 gtactcaaag agatgtatga tgacagtgtg ctccaagaga atgatttgga
601 agtataccat caatctaatg agagcactga atttaaagat gcaggagcaa
651 atcctccagc ccctaagtct aaagacattc ctccaccacc cacaataact
701 gaaattactg acccagagga cccgaagcag gcagctctga aagctgcacg
751 agcaaagcaa cccgcagtta ttccagaatc atacggacgt gatacgagca
801 aagaaaagga gtcaatagtg gggacatcat caaagggcgt tagagataaa
851 gatgtgaatg ttggcaccgt tggtacattt gttgtgccac gtgttaagat
901 gaatgcaaac aagaaaaggc aaccaatggt caatggaagg gccattataa
951 atttccagca cttgtcaaca tatgaaccag agcagtttga ggttgcaaac
1001 acccggtcga ctcaagaaca gttccaagca tggtatgaag gagttaaagg
1051 ggattatggt gttgacgaca caggaatggg gatcttattg aatggactaa
1101 tggtttggtg cattgaaaat ggtacatccc caaatataaa tggtgtatgg
1151 acaatgatgg atggtgatga gcaagtgaca tatccaatta agccattatt
1201 ggaccatgca gtgcctactt ttaggcagat tatgacgcac ttcagtgacg
1251 ttgctgaagc ttacatagag atgcgaaacc gtacaaaggc gtatatgcca
1301 aggtatggtc tacaacgtaa tttgactgat atgagtcttg cgcgatatgc
1351 atttgatttc tacgagctgc attcaaccac ccctgcacgt gcaaaagagg
1401 cacatttaca gatgaaggca gccgcactta agaatgcgaa aaatcggttg
1451 tttggtttgg acggaaacgt ctccacgcaa gaagaagata cggagaggca
1501 cacgacaact gatgttacta gaaatataca taacctctta ggaatgaggg
1551 gtgtgcaata ggacatcctc tgcactgtag tttatactta tgttatcttt
1601 agtatgcctt taatttaaat tcgtgtcttt cagtcccgaa ggagatggtt
1651 gagtgcataa catggtggga ttatatctcg gttattgcat ttgagaagtc
1701 acctttctat tacgtatcat aagggactct taaaagtgag gagtacctcg
1751 taagaaaagc ctttttggtt cgtgatcgag c