Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus isolate TSWV-NW1 nucleocapsid protein gene, partial cds.

ACC No: EF059702

Dated: 2009-12-01 | Length: 760 | CRC: 1783548067

                
ID   EF059702; SV 1; linear; genomic RNA; STD; VRL; 760 BP.
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AC   EF059702;
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DT   15-NOV-2006 (Rel. 89, Created)
DT   01-DEC-2009 (Rel. 103, Last updated, Version 2)
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DE   Tomato spotted wilt virus isolate TSWV-NW1 nucleocapsid protein gene,
DE   partial cds.
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KW   .
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OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-760
RA   Sivparsad B.J., Gubba A.;
RT   "Isolation and molecular characterization of Tomato spotted wilt virus
RT   (TSWV) isolates occurring in South Africa";
RL   Afr J Agric Res 3:428-434(2008).
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RN   [2]
RP   1-760
RA   Sivparsad B.J., Gubba A.;
RT   ;
RL   Submitted (12-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, University of KwaZulu-Natal, Agric Avenue,
RL   Pietermaritzburg, KwaZulu-Natal 3209, South Africa
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FH   Key             Location/Qualifiers
FH
FT   source          1. .760
FT                   /organism="Tomato spotted wilt virus"
FT                   /segment="S"
FT                   /host="Arachis hypogaea"
FT                   /isolate="TSWV-NW1"
FT                   /serotype="1"
FT                   /mol_type="genomic RNA"
FT                   /country="South Africa"
FT                   /db_xref="taxon:11613"
FT   CDS             complement(<1. .>760)
FT                   /codon_start=1
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:A0N076"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:A0N076"
FT                   /protein_id="ABK54016.1"
FT                   /translation="LTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQIKKMSV
FT                   ISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRLVEETG
FT                   NSENLNTIKSKIASHPLVQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMISVVLAI
FT                   YQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSSNPNAK
FT                   GSIAMEHYSETLNKFYEMFGVKKQAKLTELA"
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SQ   Sequence 760 BP; 209 A; 168 C; 132 G; 251 T; 0 other;

ef059702 Length: 760  01-DEC-2009  Type: N  Check: 3020  ..

       1  aagcaagttc tgtgagtttt gcctgttttt taaccccgaa catttcatag
      51  aacttgttaa gagtttcact gtaatgttcc atagcaatac ttcctttagc
     101  attaggattg ctggagctga gtatagcagc atactctttc cctttcttca
     151  cctgatcttc attcatttca aatgctttgc ttttcagcac agtgcaaact
     201  tttcctaagg cttctctggt atcatacttc tttgggtcaa tcccaaggtc
     251  tttgtatttt gcatcctgat atatagccaa gacaacactg atcatctcaa
     301  agctatcaac tgaagcaata agaggtaagc tacctcccag cattatggca
     351  agcctcacag actttgcatc atcaagaggt aatccatagg cttgaaccaa
     401  agggtgggaa gcaatcttag atttgatagt attgagattc tcagaattcc
     451  cagtttcctc tacaagcctg accctgatca agctatcaag ccttctgaag
     501  gtcatgtcag tggctccaat cctgtctgaa gttttcttta tggtaatttt
     551  accaaaagta aaatcacttt gtttgataac cttcattata ctctgacgat
     601  tcttcaggaa tgtcagacat gaaataacgc tcatcttctt gatctggtcg
     651  aggttttcca gacaaaaagt cttgaagttg aatgctacca gattttgatc
     701  ttcctcaaac tcaaggtctt tgccttgtgt caacaaagca acaatgcttt
     751  ccttagtgag