Sequence of DPV Potato virus M

Potato virus M isolate Ca128 coat protein gene, complete cds.

ACC No: EF063387

Dated: 2007-01-03 | Length: 915 | CRC: 537533725

                
ID   EF063387; SV 1; linear; genomic RNA; STD; VRL; 915 BP.
XX
AC   EF063387;
XX
DT   03-JAN-2007 (Rel. 90, Created)
DT   03-JAN-2007 (Rel. 90, Last updated, Version 1)
XX
DE   Potato virus M isolate Ca128 coat protein gene, complete cds.
XX
KW   .
XX
OS   Potato virus M
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RP   1-915
RA   Xu H., D'Aubin J., Nie J.;
RT   "Genomic variability in Potato virus M and the development of conventional
RT   and real-time RT-PCR procedures for its detection in seed potatoes";
RL   Unpublished.
XX
RN   [2]
RP   1-915
RA   Xu H., D'Aubin J., Nie J.;
RT   ;
RL   Submitted (16-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Charlottetown Laboratory, Canadian Food Inspection Agency, 93 Mt. Edward
RL   Rd., Charlottetown, PE C1A 5T1, Canada
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .915
FT                   /organism="Potato virus M"
FT                   /specific_host="potato"
FT                   /isolate="Ca128"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /db_xref="taxon:12167"
FT   CDS             1. .915
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ABM21680.1"
FT                   /translation="MGDSTKKAEVAKEAGTSQAAKGNRPLPTAAEFEGDDNSGDASVRD
FT                   AEVNEEASLERRLNSLREFLRERRGAIRVTNPGLETARPRLKVADDMRPDPTNPYNRPS
FT                   LEALSRIKPIAVSNNMATSEDMMRMYVNLEGLGVPTEYVQQVVIQAVLFCKDATSSVYL
FT                   DPRGSFEWPRGAITADAVLAVMKKDAETLRRVCRLYAPVTWNHMLAHNSPPADWAAMGF
FT                   QYEDRFAAFDCFDYVENTAAVQPLEGLIRRPTPREKVAHNTHKDIALRGANRNQVFSSL
FT                   NAEVTGGMNGPELTRDFSKSNNK"
XX
SQ   Sequence 915 BP; 245 A; 215 C; 268 G; 187 T; 0 other;

ef063387 Length: 915  03-JAN-2007  Type: N  Check: 9783  ..

       1  atgggagatt caacgaagaa agctgaagtc gccaaagagg caggaacatc
      51  gcaagcagcc aaaggaaaca gaccgctacc tacagcggcg gaatttgagg
     101  gtgatgacaa ctctggagat gctagtgtcc gcgacgctga ggtgaatgag
     151  gaagcgtcgc tggagcgcag attgaacagc ttgcgtgaat ttctacgtga
     201  gcgaagaggc gccatacggg taactaatcc tggtttggag actgcccgtc
     251  ctcgactcaa ggtagcagac gatatgcgcc cggatccgac taatccttac
     301  aacaggccat cgcttgaggc gctgagcaga attaaaccca tagctgtgtc
     351  gaacaacatg gccacatctg aggacatgat gcgcatgtac gtcaatcttg
     401  aaggcttggg agtgccgact gagtacgtgc agcaagtggt gatccaagcg
     451  gtgcttttct gcaaagatgc aactagctcg gtgtatctcg atccacgcgg
     501  ctccttcgaa tggccaaggg gtgcgatcac agcagatgcg gtgttggcgg
     551  tgatgaagaa agacgcagag accctgcgca gagtctgcag gctgtacgcg
     601  cccgtcacgt ggaatcatat gctggcgcac aattctccac cagcagactg
     651  ggcggctatg ggtttccagt atgaagatag atttgcggcc tttgattgct
     701  ttgactacgt ggagaataca gctgcagttc aaccgctgga agggctaata
     751  cgccgtccca ctccaagaga gaaggttgcg cacaataccc ataaagatat
     801  agctctgaga ggggctaatc gcaaccaggt gtttagttcg ctcaacgctg
     851  aggtaactgg aggtatgaat ggtcccgagc tcactaggga tttcagcaag
     901  tcgaataaca aatga