Sequence of DPV Tomato mosaic Havana virus
Tomato mosaic Havana virus segment A, complete sequence.
ACC No: EF088197
Dated: 2008-04-03 | Length: 2619 | CRC: -1633530235
ID EF088197; SV 1; circular; genomic DNA; STD; VRL; 2619 BP.
XX
AC EF088197;
XX
DT 10-JAN-2007 (Rel. 90, Created)
DT 03-APR-2008 (Rel. 95, Last updated, Version 2)
XX
DE Tomato mosaic Havana virus segment A, complete sequence.
XX
KW .
XX
OS Tomato mosaic Havana virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2619
RA Monger W.A., Mumford R.A., Garcia E.A., Boa E.;
RT "Occurrence of Tomato mosaic Havana virus in Nicaragua";
RL Plant Pathol. 57(2):387-387(2008).
XX
RN [2]
RP 1-2619
RA Monger W.A., Mumford R.;
RT ;
RL Submitted (25-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL PLHB, Central Science Laboratories, Sand Hutton, York YO41 1LZ, UK
XX
FH Key Location/Qualifiers
FH
FT source 1. .2619
FT /organism="Tomato mosaic Havana virus"
FT /segment="A"
FT /mol_type="genomic DNA"
FT /country="Nicaragua"
FT /db_xref="taxon:223356"
FT gene 336. .1091
FT /gene="AV1"
FT CDS 336. .1091
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:A1YKY8"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:A1YKY8"
FT /protein_id="ABM45866.1"
FT /translation="MPKRDLPWRSMAVTSKVSRNANCSPRSGIGPKYNKAAEWVNRPMY
FT RKPRIYRTLRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSIMN"
FT gene complement(1088. .1486)
FT /gene="AC3"
FT CDS complement(1088. .1486)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:A1YKY9"
FT /protein_id="ABM45867.1"
FT /translation="MDSRTGDIITARRAENGVFIWEIENPLYFKINRVEEPLYTRSKVY
FT HIQIRFNHNLRRALHLHKAFLNFQVWTTSMTASGSTYLARFRHFVIVYLDQLGVISLNN
FT VIRAVRFATDRHYVHDVLENHSIKFKFY"
FT gene complement(1233. .1622)
FT /gene="AC2"
FT CDS complement(1233. .1622)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /db_xref="GOA:A1YKZ0"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:A1YKZ0"
FT /protein_id="ABM45868.1"
FT /translation="MRSSSPSYPPSIKIAHRQAKKKTIRRRRIDLECGCSIYFHIDCAG
FT HGFTHRGYHHCTSGREWRVYLGDRKSPLFQDKQSRGTTIHQEQGVPHTNQVQPQPEESV
FT ASPQSLPELPSVDDIDDSFWVNLFS"
FT gene complement(1534. .2619)
FT /gene="AC1"
FT CDS complement(1534. .2619)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication protein"
FT /db_xref="GOA:A1YKZ1"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:A1YKZ1"
FT /protein_id="ABM45869.1"
FT /translation="MPPPKKFRVNSKNYFLTYPQCSITKEEALSQIKNLNTPVNKKFIK
FT ICRELHENGEPHLHVLLQFEAKYQCTNNRFFDLGSPSRSAHFHPNIQGAKSSSDVKTYI
FT DKDGDVLEWGEFQIDGRSARGGCQSANDTYAKALNASCAEEALQIIKEQQPQHFFLHHH
FT NLVANAHRIFQKPPEPWVPPFRLSSFTKVPEEMQHWADDYFGRGSAARPDRPISIIVEG
FT DSRTGKTMWARALGPHNYLMGHLDFNSRVYSNTVEYNVIDDIAPHYLKLKHWKELLGAQ
FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGSSYKDFLNREENTALRNWTIKNALFVTLI
FT SALYQDSSQAGKEEDDQEKAD"
FT gene complement(2205. .2462)
FT /gene="AC4"
FT CDS complement(2205. .2462)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:A1YKZ2"
FT /protein_id="ABM45870.1"
FT /translation="MGSLISMCFYSSKPNTNARTTDSSTWAPHHGQHISIRTYRELSRA
FT PMSRHTSTRTEMFWSGANSRSTVDLPEEAASRPTIHMQRH"
XX
SQ Sequence 2619 BP; 659 A; 571 C; 606 G; 783 T; 0 other;
ef088197 Length: 2619 03-APR-2008 Type: N Check: 7059 ..
1 atttgtaatt tggagctgta caccaattga gctctctcaa acttgctgat
51 tcaattggtg tattggggta acttatatac tagaaccctc tatagaacta
101 ttaatcttgt tcctacacgt ggcggccatc ctataatatt acctgatgac
151 cgcgcgccct ttcctctttc cgtacaattg ggagtgcatg ctttttcttt
201 agttttctct ttaatttaaa tttgaccaat catgttacgt ctgacgagct
251 tatgtacatg caacaacttg ggcctcaagt tgttgggcct gggttataaa
301 ttaaagagat attggcccaa tctagttaac ccaaaatgcc taagcgtgat
351 ttgccatggc gttctatggc ggtaacctca aaggttagcc gcaacgctaa
401 ttgttctcct cgttcaggaa ttgggccaaa atacaacaag gccgctgaat
451 gggtcaacag gcccatgtac aggaagccca ggatctatcg gactctgagg
501 agtcctgatg tgcccagagg atgtgaaggc ccttgtaaag tccagtccta
551 cgaacagcgt catgacatct cacacgtggg caaggtcatg tgtatatctg
601 acgtgacacg tggtaatggt attactcatc gtgtgggtaa gcgtttctgt
651 gtgaagtccg tgtacatact agggaagatc tggatggatg agaatatcaa
701 gctcaagaac cacacgaaca gtgtcatgtt ttggctggtc agagatagaa
751 ggccgtatgg gactcctatg gattttgggc aggtgttcaa catgttcgac
801 aacgaaccca gtacagccac tgtgaaaaat gatcttcgtg atcgttacca
851 ggtcatgcac aagttctatg gcaaggtaac cggtggtcag tatgccagca
901 atgaacaggc aatcgtgaag aggttctgga aggtgaacaa ccacgtcgtc
951 tacaatcacc aagaggctgg caaatacgag aatcatactg agaacgctct
1001 actattgtac atggcatgta ctcatgcctc taaccctgta tatgcaactt
1051 tgaagatccg gatctatttt tatgattcga tcatgaatta ataaaatttg
1101 aattttattg aatgattttc taatacatcg tgtacataat gtctatctgt
1151 tgcaaaacga acagctctaa ttacattgtt caaggaaatt acacctaatt
1201 gatctaagta cacgataaca aaatgtctaa acctagctaa ataagttgac
1251 ccagaagctg tcatcgatgt cgtccacact tggaagttca ggaaggcttt
1301 gtggagatgc aacgctctcc tcaggttgtg gttgaacctg atttgtatgt
1351 ggtacacctt gctcctggtg tatagtggtt cctctactct gtttatcttg
1401 aaatagaggg gattttctat ctcccagata aacacgccat tctctgcccg
1451 acgtgcagtg atgatatccc ctgtgcgtga atccatgccc agcgcagtct
1501 atgtggaagt atatggagca accgcactcc agatcaatcc gccttctcct
1551 gatcgtcttc ttctttgcct gcctgtgagc tatcttgata gagggcggat
1601 atgagggtga cgaagagcgc attcttgatg gtccagttcc tgagtgctgt
1651 gttttcctct ctgttcagga aatctttata gctggaaccc tcacctggat
1701 tgcaaagcac gattgctggg atcccacctt taatttgaac tggcttgccg
1751 tacttgcaat ttgactgcca gtctttctgg gcccccagca attctttcca
1801 gtgctttagc tttagatagt gcggtgcgat gtcatcaatg acgttatact
1851 ccactgtatt tgaatagact cgagaattga aatccaaatg gcccatgaga
1901 taattgtgtg gacccagtgc tcgtgcccac atcgtcttgc ccgtcctcga
1951 gtctccttca actatgatac taataggtct atctggccgc gcagcggaac
2001 ccctcccaaa ataatcatct gcccaatgct gcatttcttc cgggactttt
2051 gtgaaagaag acagacgaaa tggagggacc catggttcag ggggtttttg
2101 aaatatccta tgtgcatttg cgaccaggtt atgatgatgg aggaagaaat
2151 gctgaggctg ctgttctttt attatttgta gagcctcttc tgcacatgag
2201 gcatttaatg cctttgcata tgtatcgttg gccgactggc agcctcctct
2251 ggcagatcga ccgtcgatct ggaattcgcc ccactccaaa acatctccgt
2301 ccttgtcgat gtatgtcttg acatcggagc tcgacttagc tccctgtatg
2351 ttcggatgga aatgtgctga ccgtgatggg gagcccaggt cgaagaatct
2401 gttgttcgtg cattggtatt tggcttcgaa ctgtaaaagc acatggagat
2451 gaggctcccc attctcatga agctctctac agatctttat gaatttcttg
2501 ttaactggag tgtttaggtt ttttatttgg gaaagtgcct cttctttggt
2551 aatggagcac tggggataag ttaggaaata gtttttagag ttaactctaa
2601 atttctttgg tggtggcat