Sequence of DPV Sweet potato chlorotic fleck virus

Sweet potato chlorotic fleck virus isolate KINT2 coat protein (CP) and putative nucleic acid binding protein (NB) genes, complete cds.

ACC No: EF155968

Dated: 2012-12-31 | Length: 1578 | CRC: -1303925789

                
ID   EF155968; SV 1; linear; genomic RNA; STD; VRL; 1578 BP.
XX
AC   EF155968;
XX
DT   31-DEC-2012 (Rel. 115, Created)
DT   31-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE   Sweet potato chlorotic fleck virus isolate KINT2 coat protein (CP) and
DE   putative nucleic acid binding protein (NB) genes, complete cds.
XX
KW   .
XX
OS   Sweet potato chlorotic fleck virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Carlavirus.
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RN   [1]
RP   1-1578
RA   Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT   "Infection with Sweetpotato mild mottle virus and sweetpotato chlorotic
RT   fleck virus in wild plants (family Convolvulaceae) in Uganda";
RL   Unpublished.
XX
RN   [2]
RP   1-1578
RA   Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT   ;
RL   Submitted (30-NOV-2006) to the INSDC.
RL   Department of Applied Biology, University of Helsinki, P.O. Box 27
RL   (Latokartanonkaari 7), Helsinki FIN-00014, Finland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1578
FT                   /organism="Sweet potato chlorotic fleck virus"
FT                   /host="Ipomoea cairica"
FT                   /isolate="KINT2"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Mpigi"
FT                   /isolation_source="leaf"
FT                   /db_xref="taxon:263004"
FT   gene            29. .1141
FT                   /gene="CP"
FT   CDS             29. .1141
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="ABO92965.1"
FT                   /translation="MFAGESQKQFKERLDKYSRIRREARDEGKSSSEVKALLDLEVEED
FT                   KKRFAHKEPTKNNSPQVFQSHILGAPMAAREADTMDKVESSKGKEKAGGQTTTLEGLNE
FT                   VKAAQGEISDQQLMRHDALIKWYMENYRPSDVVNPLMQSGDKHVTLSDNLKEDAANIYS
FT                   RPNFNTLLKWNREPVSQSIATAEDIAHIEAMLVGLGIPQERVRTAILDIVLYAAHSSSS
FT                   PQQLYEGDIDFRDANFKEAISRSSVAAVIKDKSTIRKVCRLFAPVVWSYMIINNEPPSG
FT                   WQAKGFPENAKFAAFDTFDFVTNNAAIKPLEGIARPPNSVEYIAAQTSKRILIDKARRN
FT                   EKLSNYEASVTGGQQACEIKTELKGNGKCK"
FT   gene            1125. .1526
FT                   /gene="NB"
FT   CDS             1125. .1526
FT                   /codon_start=1
FT                   /gene="NB"
FT                   /product="putative nucleic acid binding protein"
FT                   /protein_id="ABO92966.1"
FT                   /translation="MGSASERPPNFVATFLYGRGLLCDWDCCLLISSVVSNYNKGMRTY
FT                   KFFACGQSKSAIKRRARRMQICPRCAKYECGKRCEPNTYSQFQVKELVTVGVNRYTTEN
FT                   ITKKGTNVRRHCKNELEFIKYESLKVKPK"
FT   3'UTR           1527. .1578
XX
SQ   Sequence 1578 BP; 508 A; 293 C; 403 G; 374 T; 0 other;

ef155968 Length: 1578  31-DEC-2012  Type: N  Check: 3672  ..

       1  gtctttaggt tgtgagactt aaattgaaat gtttgctggg gagagtcaga
      51  aacagtttaa agaaagattg gacaaatata gtaggatcag gagagaggca
     101  agagatgagg ggaagagtag ctctgaggtg aaggcgctgt tagatctaga
     151  agtagaagag gacaagaaga gatttgcaca caaggagcct accaagaaca
     201  actcacctca agtgtttcaa agtcacatac ttggagcacc tatggcggcg
     251  agggaggctg atacaatgga taaagtggaa tcaagcaaag gtaaggagaa
     301  agcgggaggg caaacaacca cacttgaagg actgaatgag gtaaaggccg
     351  ctcagggcga gatatccgat cagcaattaa tgaggcatga tgcattgatc
     401  aagtggtaca tggaaaacta cagaccttct gatgtagtta atcctctcat
     451  gcaaagtgga gataagcacg tgacactcag cgacaatttg aaggaggatg
     501  cagctaacat atatagcagg cccaatttca acactcttct aaagtggaac
     551  agggagcccg tgagtcaaag cattgcaaca gctgaggata tagcccatat
     601  tgaagcgatg cttgttggtt tgggcatacc acaagagaga gtgaggacag
     651  ccattctgga tattgttctc tatgctgctc actcaagctc ctcacctcaa
     701  caactgtatg agggtgacat agactttcgc gatgcgaact tcaaagaggc
     751  tatatctaga tcctctgtgg ccgcagtaat caaggacaaa tccacaatta
     801  gaaaagtctg tcgccttttt gcacctgtgg tttggagcta tatgataatc
     851  aacaatgaac ccccatcagg gtggcaggct aaaggcttcc cagagaatgc
     901  aaagttcgct gccttcgaca cttttgattt cgtgacaaac aatgccgcta
     951  tcaaacccct tgagggcata gctagacccc cgaattctgt ggaatacata
    1001  gctgctcaaa caagcaagag gatccttatt gacaaggctc gtaggaatga
    1051  gaagctcagc aattatgagg cgagcgtgac aggagggcag caagcatgtg
    1101  aaatcaagac cgagcttaaa ggtaatggga agtgcaagtg agagacctcc
    1151  aaatttcgta gctacctttc tttatggccg cgggctgttg tgtgattggg
    1201  attgttgtct tttgatttct agtgtggtta gtaactacaa taagggcatg
    1251  agaacctaca agttcttcgc ttgtggccaa tcaaaatcgg ccattaagcg
    1301  gagggctagg aggatgcaaa tttgccccag gtgtgctaaa tatgagtgtg
    1351  gtaagaggtg tgaaccaaac acctatagtc agtttcaggt gaaggaattg
    1401  gtcactgttg gtgtgaatag gtacactacc gaaaacatca caaagaaagg
    1451  gaccaatgtc cgacgccatt gtaaaaatga attagaattt ataaaatatg
    1501  aaagtcttaa ggtaaagcct aaataataaa taaaccatta ggactataaa
    1551  ctttgcatgt tttaaagtac ttttgagc