Sequence of DPV Sweet potato mild mottle virus
Sweet potato mild mottle virus isolate 57KAP polyprotein gene, partial cds.
ACC No: EF155969
Dated: 2010-03-19 | Length: 7784 | CRC: -1391130695
ID EF155969; SV 1; linear; genomic RNA; STD; VRL; 7784 BP.
XX
AC EF155969;
XX
DT 25-JAN-2010 (Rel. 103, Created)
DT 19-MAR-2010 (Rel. 104, Last updated, Version 2)
XX
DE Sweet potato mild mottle virus isolate 57KAP polyprotein gene, partial cds.
XX
KW .
XX
OS Sweet potato mild mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
XX
RN [1]
RP 1-7784
RX PUBMED; 19923261.
RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.;
RT "Recombination and selection pressure in the ipomovirus sweet potato mild
RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in
RT the centre of evolution in East Africa";
RL J. Gen. Virol. 91(PT 4):1092-1108(2010).
XX
RN [2]
RP 1-7784
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (30-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, P.O. Box 27
RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .7784
FT /organism="Sweet potato mild mottle virus"
FT /host="Ipomoea obscura"
FT /isolate="57KAP"
FT /mol_type="genomic RNA"
FT /country="Uganda:Kapchorwa"
FT /isolation_source="leaf"
FT /db_xref="taxon:41459"
FT 5'UTR 1. .139
FT CDS 140. .>5867
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2SLL9"
FT /protein_id="ACQ45594.1"
FT /translation="MGKSKLTYKQCIAKWGKAALEAQNNGSKRSVSVGTHQIAANIFAF
FT YDVKDYHLFAMGKRGGLTPAAEQLSIAIERGTIYKVQHDCHFCPDCDVIIDSEEGWCCE
FT DCGSQFNKRDDNILDNKNDVARALGGWTEYEDAIWASFEAAKADMLEVAPTVGQLEKEI
FT RAIEKSAGKKLTAYEEEMLEELAYKLDVAKMNEEKQEKVFEETDFSISNDEFPTLEGPQ
FT GEEFNESIEENNEENSIEVTREVEQFREFEITHEKIDEPIKNVAKTHVVAAPVVVLSVA
FT KSGMAIIKEKLAGKPKTTMWITKSKTSAAVPATPSESAVWVAKPRPASAISTVEPIAKS
FT TVKACNDVINIGAMVCPITVSAIESHSHQNEKLNESLNAQVNGATKEEEPVIKYNITFG
FT SFNYEVSAKGERVQAAVQLDEMIEGPDTEPILICQTGSSHKHETKKAAKGLFVQDRFSV
FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDVFEC
FT PYCHMSSNELEGLNGDNCEKCKDLFYKHIDDPRRVEEEYLMVPLVPIDQHVHEEHSIIS
FT RAKWEAHESICEGEVNIAKVFDGKPTASKKKFKTKQALNVANIPLDDFMQELVEICLER
FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFCHTHKLCLCGRIDREKKI
FT RSSEVRPGWSGVILHKNQVAECDWNKFVFIDDMCVVQGRNLITNKIENALEKKGSNRLK
FT QIQFYANSIVPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC
FT CFRVIKSKRADIVNALNKVKQRGERDEFIYDELIKLFELQAPPPYKIATITSDDDVLRT
FT LGLGGELYSGRLSLIMQHLQGLHTSISMLHQSLAGAQNDQQIDRQALHNQVRILHQRNE
FT EHMPFLKKAVDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSIHEFFPNIMSR
FT ANKAGVAVIKSETSLSKAFALMNSAKSMNAIHTLIGEDIIENVNGACLLKNDKTFFSIG
FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPMPTFHDATVWEFNEGYCYANQFAIMV
FT GFVNEDEMEFYKNQMNQIVLNLGAWPTFEQYLIELRAVSLDYPKVRGCPAAIHLVSHAN
FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID
FT LFEHHPENVFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF
FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN
FT IGLTAKEISSRKLITMYHQDLFSWHEWQRLRLMPHSLNAQKLFEEANERAYGKQSWNLR
FT VIWGACKEVLYAVTRGAYVKVRGTTVRCADAVVYGFYGRTRAMVTSWASEHWGAIFTSC
FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGGGELYVEQHGKREEAFLFKICAIF
FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANESDDKVEQDLKESLKFTSFE
FT IEVPNVVLSQDDMTFERWFQHQIQYAKVCADPIYSGPLRMLAITDNSARELAMNIRTSG
FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG
FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK
FT KKIVKLSATHAGMDRECETRHKIKVETLSETPIESWVSMQGSGVVGDATSVGDVILVFV
FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT
FT FNIDVVVDFGEKISPNLSSDERCIMLGRQRISRAE"
FT mat_peptide 140. .2413
FT /product="proteinase P1"
FT mat_peptide 2414. .3772
FT /product="helper component proteinase HC-Pro"
FT mat_peptide 3773. .4654
FT /product="P3 protein"
FT mat_peptide 4655. .4810
FT /product="6K1 protein"
FT mat_peptide 4811. .5866
FT /product="cytoplasmic inclusion protein CI"
FT gap 5868. .5967
FT /estimated_length=unknown
FT CDS <5968. .7473
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2SLM0"
FT /protein_id="ABO92958.1"
FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL
FT INCPRATASAFSEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDAEQMYVPKLD
FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMVEIEKFAHFWAEEHGLNNVLME
FT REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQKELEDLDADTTI
FT TVVQRETQKARIRDQIEALRAQQIVRPSEAQLQPDVTPTQIVTFEPPRVSGVGASWIPR
FT QQRNYMTTAYIEKIKAYAPHPNLIESGLASEAQLTGWFENTSRDYQVSMDVFMSAILPA
FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ
FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMKLTTKQMKVKHQIIAAN
FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT mat_peptide 5968. .6564
FT /product="nuclear inclusion body protein NIb"
FT mat_peptide 6565. .7470
FT /product="coat protein CP"
FT 3'UTR 7476. .7784
XX
SQ Sequence 7784 BP; 2388 A; 1365 C; 1872 G; 2059 T; 100 other;
ef155969 Length: 7784 19-MAR-2010 Type: N Check: 6829 ..
1 taaataaaaa tgatatagag aaaatttgaa agaaaagttt gaatctagca
51 aacttattcg caattcagtt ttactttaaa tactttatct caattttatc
101 gaactgtggt gtccgcttag aaacggatca catgcagaaa tggggaaatc
151 caagctcact tacaaacaat gcattgctaa atggggaaaa gccgcacttg
201 aagctcaaaa caacgggtcg aaaagaagtg tctctgttgg cactcatcaa
251 attgctgcaa atatttttgc tttttacgac gtaaaagatt accatctatt
301 tgccatgggc aaaagaggtg gactgactcc agcagctgaa caattaagta
351 ttgccatcga acgaggaacg atttataagg tgcagcacga ctgtcacttc
401 tgtcccgatt gcgacgtaat cattgactct gaagagggat ggtgttgtga
451 ggattgcggt tcgcaattca ataagcgcga cgacaacata cttgataaca
501 aaaacgatgt cgcacgtgct cttggtggct ggactgaata tgaagacgcc
551 atctgggcgt cgtttgaagc tgctaaagct gacatgctcg aagtggcgcc
601 aactgtgggt cagcttgaaa aagagatcag agccatagaa aaatcagcgg
651 gcaaaaaact caccgcttat gaagaagaaa tgcttgaaga gttggcctat
701 aaacttgatg tggccaaaat gaatgaggaa aagcaagaaa aggttttcga
751 ggagactgat ttttctatat ccaatgacga atttccgact ctcgagggac
801 cacaaggcga agaattcaat gaatctattg aggaaaataa tgaggaaaac
851 tcgattgaag tcacgagaga ggttgaacag tttagagaat tcgagattac
901 tcatgagaaa attgatgaac caattaaaaa cgttgctaaa acgcacgtag
951 ttgcggcacc tgtcgtggtt cttagtgtgg ccaagtctgg aatggcaatt
1001 atcaaggaaa agctggctgg aaaaccaaaa acgactatgt ggattacgaa
1051 gtcgaaaact tctgctgcag ttcctgctac gccgtctgag tcggccgtct
1101 gggttgctaa gcctaggcca gcgtctgcga tttccactgt tgaaccaatt
1151 gctaaatcga cagtgaaagc ttgtaatgat gtgatcaata taggcgctat
1201 ggtgtgtcct atcacggttt cagcaattga atcacatagt catcaaaatg
1251 aaaagctcaa tgaatcccta aacgcacaag ttaatggtgc aactaaggag
1301 gaggagccag taatcaaata taatataact tttggttcat tcaattatga
1351 agtaagtgct aaaggggaac gagttcaagc tgctgtccaa cttgatgaga
1401 tgatagaagg acctgatact gaacctattc tgatttgcca aacaggaagc
1451 tcccataaac atgaaaccaa gaaggcagca aaagggcttt ttgttcagga
1501 cagattctcc gtaattggga ataaggtttt gtgcaagtca ttccccgcat
1551 tcaagaattt tatgaatgaa acaaggttgg gaggaattta cagaacaaga
1601 aaagggaatt acaagaacgc tgcattgcgt ttattgaagg ccaccaaagt
1651 tcaagtattt tacgatggga taaaggatgt ttttgagtgt ccgtattgcc
1701 acatgagcag taatgagcta gagggcctta atggagataa ttgcgaaaag
1751 tgtaaggatc tgttttataa acacattgat gatccaagaa gagttgaaga
1801 ggaatatctt atggttcctc tcgtgcctat tgatcagcat gtacatgaag
1851 aacatagcat catcagtagg gctaaatggg aggctcatga atccatctgt
1901 gaaggagaag tgaacattgc taaggttttt gatggaaagc cgactgcaag
1951 caagaagaag tttaaaacta aacaagcact gaatgttgca aatataccgc
2001 ttgacgattt tatgcaggaa cttgttgaaa tttgccttga gagaaacact
2051 cccattgaaa ttattggggg tgtgaaatct tttaatgtgg ttaagttgag
2101 gcatactacg agagatatca gcaaatctgg tgaggatgac atgtatccaa
2151 ctgaaaggga gtggttttgc cacacgcata agctatgttt gtgtggtagg
2201 attgatcgtg agaagaaaat cagaagttcc gaggtgcgtc caggttggag
2251 tggagtaatc ttacataaga atcaagtggc ggaatgcgat tggaacaagt
2301 ttgttttcat tgatgatatg tgtgtggtgc aaggtagaaa cttgatcacg
2351 aataagattg agaacgcgct tgaaaagaaa gggtctaata gacttaagca
2401 gatacaattc tatgcaaatt ctattgtacc caatttcaag gatgaatttg
2451 acagagctag ccgtctgaaa gctgatcatg aaccagatga atcgtctaac
2501 aatgaactca ttggcaggct ggctaagctt gttgcagcag tcattccaaa
2551 aggccactta tactgcaaaa catgttgttt tagggttatc aagagcaagc
2601 gcgcagatat agtcaacgca ttgaataagg ttaagcagcg tggcgaacga
2651 gatgagttta tttatgatga gctcatcaaa ctctttgagt tacaagcacc
2701 accaccgtat aagattgcaa caatcaccag tgatgatgat gtgttgcgta
2751 cattaggatt gggtggagaa ttatatagtg ggcgattgag tcttataatg
2801 caacacttac aggggctgca tacgtcaata tcaatgcttc accaatcgct
2851 tgcaggagct cagaacgacc aacaaattga taggcaagcg ctccacaacc
2901 aagtgcggat tttacatcag agaaatgagg agcatatgcc ttttctgaag
2951 aaagcagtcg atgaaattca gcttttaaat gcgacagatc aggttgccaa
3001 tgctcgggaa ttgtacttgg atactagggc aactagtact ggagatttcg
3051 acatcttaag aaaataccag agcatacacg agttctttcc caatatcatg
3101 agccgggcca ataaagcagg ggtggcagtt atcaaatctg aaacatcatt
3151 gagcaaagcc tttgccctta tgaacagtgc taagtcgatg aacgctatcc
3201 atacgctcat aggggaagac attatagaaa atgttaatgg agcttgctta
3251 ctaaagaatg acaagacatt tttttcaatt ggttgcaagc aaggtgttga
3301 tggtagtaag atgtatggcc cgctttgtcc gaccaaacag catgtaagaa
3351 tccaccgagt tgaatctaac atgcaaattc ctatgccaac attccacgat
3401 gcaaccgtct gggagtttaa cgaaggttat tgttatgcta atcaatttgc
3451 aataatggtt ggttttgtca acgaggatga aatggagttc tataagaatc
3501 aaatgaatca aattgtgttg aacttagggg cttggccgac ttttgagcaa
3551 tatttaattg agctacgagc agtctcgctt gattatccaa aagttagagg
3601 gtgtccagct gctatccatt tagtttctca tgcaaacaag ctcattcatg
3651 ttttgggaca atttggaaca ataaaccaag gttggcatgc acttgaagta
3701 gcaactgtgg gtgaacttgt agacttgtgc cataagaaag ttgaaggtga
3751 gatgttaact tataaagttg gtggcattta tgactgggtg actaaaaaga
3801 atgcttttat cgatctattt gaacaccatc cagaaaatgt attcaaaatt
3851 tgtacatcac catcagtgtt gtggttattt gctcgcagct gcgaaaagca
3901 tgattttatt aactacatta tggccagaga ccactcattg gtgggtttgt
3951 tcattaaatt ggagtatgtt ggaaaacatc tccatatttt ccaaagtgtc
4001 gacgatgttt gtgttgaata tgcggcgtct atgagggaaa tcattgaaga
4051 gcatgctgat attcatgggc tgcgggactc agtggtggat agaatggttc
4101 atgcatatca caatgaggtg agggaagcaa ataaatatga gttagtcgat
4151 agaattcttg aaaaaaacat tggattaacc gcaaaagaaa tttcatcgcg
4201 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc
4251 agcgtttgag attaatgcca cattccttga atgcgcagaa acttttcgaa
4301 gaggcaaacg agcgcgcata cgggaaacaa tcatggaatt tacgcgtgat
4351 ttggggtgcg tgcaaggaag tgttatatgc agtcacacgc ggagcttatg
4401 taaaagtcag aggaacaact gtgcgctgtg ccgacgccgt agtatatggc
4451 ttctatggta gaacacgagc gatggtgaca agctgggcta gtgaacactg
4501 gggagcaatt tttacgtcgt gtctgagagc attagttgtt atggtggtta
4551 cggcatacat atcaacttgg attcctaaga ttaggaaaat gattaaacgt
4601 gaaaagaaac agtttgaaga acttggaggt ggagagttgt atgtggagca
4651 gcatggcaaa agagaggaag cgtttttgtt taagatttgc gccatcttcg
4701 cacttatagc aggcatagtt gactacgagt ggggagcagc cgcatgcgca
4751 acaatgaaca aagtcaagag catatgcact gttcttgggt ctgttgggat
4801 tgagagccat gccaatgagt ctgatgacaa agttgagcaa gacttaaagg
4851 agtcccttaa atttacatct ttcgagattg aagtgccaaa cgtcgttcta
4901 tctcaagatg atatgacttt tgaaaggtgg ttccaacatc agatccaata
4951 tgccaaagtg tgtgcagatc ccatttatag tggtccgcta cgcatgctag
5001 ctattacaga taattctgca agagagctag caatgaacat tcgcacatca
5051 ggggaaacag atttgcgtgt ttatagtggg gttggtggag gaaaatcaac
5101 aaggttaccc aaggaactca gcatgtttgg gcatgtgcta atttgtgttc
5151 ctacgagagt tttggcagaa agcttattaa catcattcat ggtacttttc
5201 aacatggatg ttaatgtagc ttatagagga aggatacata ctggtaacgc
5251 acccatcaca ataatgactt atggttacgc attcaacttt ttggtgcaca
5301 aaccaatgga attgaaccga tatgattatg tgttactaga tgaaattcac
5351 accaatcctg ttgaatttgc acctttgttt tcttttatca aaaccacaga
5401 tccaaagaag aaaattgtta agctatcagc aacccatgct ggtatggacc
5451 gcgagtgcga aaccaggcac aagattaagg tagaaaccct gagcgaaacg
5501 ccaattgaaa gttgggtttc tatgcaaggt tctggagtcg ttggcgatgc
5551 aacatctgtt ggggacgtga ttctagtctt tgttgcatct ttcaaggatg
5601 tcgacacatg tgccaatgga ttacgatcta aaggcttcaa agttctgaaa
5651 gttgatagta gaaacttcag acgtgatgca gatgtggata aacaaattca
5701 atcactgggt gaagggaaga aattcatagt cgctacaaat ataattgaga
5751 atggagtgac attcaacatt gatgttgttg ttgattttgg cgagaaaatc
5801 agccccaatc tctcgagcga tgagcggtgt atcatgttag ggaggcagag
5851 aatatcgcga gcagaaannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5951 nnnnnnnnnn nnnnnnnggg aataatagtg gtcagccctc aacagttgtc
6001 gataacacgt tgatcttgat gattgcgatg gaatatgcga tagctaaggt
6051 ttttgtcaca cgccctgaca tcaagtacgt ctgtaatggg gacgacctct
6101 taattaattg tccaagggct actgcaagcg cctttagtga gcatttcaag
6151 gacgcattcg cagacttaag tctgaactac gacttcgatc acgtatgtga
6201 taagatcaca gatgttgatt tcatgagtca tagcttcatg tggttagatg
6251 ctgagcaaat gtatgtaccg aagctggata aggagcggat cgtagcaatc
6301 ttggagtggg aaagaagtga tgagcagttc agaacaagga gcgccttgaa
6351 tgctgcctac attgagagct ttgggtatga agatttgatg gttgagattg
6401 agaaattcgc tcatttttgg gctgaagagc acggtcttaa taacgtcttg
6451 atggagcggg aaaaggttag agatttgtac gtcaatgaag attttgacgc
6501 gtcagctttt gaaaagttct atccagagac attctcacca tttgacgttt
6551 atgttgagcc gcatgcatca acgtccaaga caatcgagga attgcagaaa
6601 gaattggaag atttggatgc agacacgaca atcactgtgg tccaaaggga
6651 aacacaaaag gcgagaataa gagatcaaat cgaggcactt agggcacaac
6701 agattgtgag accttctgag gcgcagcttc agcctgacgt aactcccact
6751 caaattgtta cgtttgagcc accaagagtc tccggagttg gtgcttcatg
6801 gatcccacgc caacaaagaa actacatgac gactgcttac atcgagaaga
6851 ttaaggctta tgccccacac ccaaacttga ttgaatctgg gctagctagt
6901 gaagctcaat taaccggttg gttcgagaac acaagcaggg attaccaagt
6951 tagtatggac gttttcatga gtgcaatact gccagcatgg attgttaact
7001 gcataatcaa tggaacatct caggagcgaa ctaatgagca tacatggagg
7051 gctgtaatta tggcaaatat ggaggaccaa gaggtgcttt attaccccat
7101 caagcccata ataatcaatg ctcaaccaac tttaaggcaa gtgatgcgtc
7151 attttggcga acaagccgtc gctcaataca tgaacagcct tcaagttgga
7201 aagcctttta cagtgaaagg cgccgtaact gctggctacg ctaatgttca
7251 agatgcttgg ctaggtatcg actttctccg ggacacaatg aagttgacaa
7301 caaaacagat gaaagtcaag catcaaatca ttgcagcgaa cgtaacaagg
7351 cgaaaaatcc gtgttttcgc tcttgcggcg ccgggggatg gcgatgaact
7401 ggacacagaa aggcatgttg ttgacgatgt ggctaggggt cgtcatagtc
7451 tgagaggagc tcaactcgac taaatgagca tgttatcttt aatttcaact
7501 acgtgttttt cttatttcaa ttatgttccg tgctttatgt ttgtgtgttg
7551 tggcacttga accaggtaca gctggcaggt gtttcggcat ggtgtggtta
7601 gacaattggc acgcgccggt agtctaagaa gcgctatgta tcacgtggtt
7651 ggttaattca tagtttgtat ggattaatca agaagcgttt atggcccaaa
7701 agggcaccag aaaatggttg cgtcattcgt ggcgtaatca gtttttggag
7751 tttggctagg taacttgtcg cctatccaaa agcc