Sequence of DPV Sweet potato mild mottle virus
Sweet potato mild mottle virus isolate R58LUW polyprotein gene, partial cds.
ACC No: EF155971
Dated: 2010-03-19 | Length: 7781 | CRC: 1879692835
ID EF155971; SV 1; linear; genomic RNA; STD; VRL; 7781 BP.
XX
AC EF155971;
XX
DT 25-JAN-2010 (Rel. 103, Created)
DT 19-MAR-2010 (Rel. 104, Last updated, Version 2)
XX
DE Sweet potato mild mottle virus isolate R58LUW polyprotein gene, partial
DE cds.
XX
KW .
XX
OS Sweet potato mild mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
XX
RN [1]
RP 1-7781
RX PUBMED; 19923261.
RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.;
RT "Recombination and selection pressure in the ipomovirus sweet potato mild
RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in
RT the centre of evolution in East Africa";
RL J. Gen. Virol. 91(PT 4):1092-1108(2010).
XX
RN [2]
RP 1-7781
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (30-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, P.O. Box 27
RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .7781
FT /organism="Sweet potato mild mottle virus"
FT /host="Ipomoea indica (Ipomoea acuminata)"
FT /isolate="R58LUW"
FT /mol_type="genomic RNA"
FT /country="Uganda:Luwero"
FT /isolation_source="leaf"
FT /db_xref="taxon:41459"
FT 5'UTR 1. .139
FT CDS 140. .>5867
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2SLM3"
FT /protein_id="ACQ45596.1"
FT /translation="MGKSKLTYKQCIAKWGKAALEAQNNGSKRSVTVGTHQIAANIFAF
FT YDAKDYHLFAMGKRGGLTPAAEQLRIAIERGTIYKVQYDCHFCPDCDAIVDSEEGWFCE
FT DCGSQFNKRDDNVLDNKNDVARALGGWTEYEDAIWASFEAAKADMLEVAPTVGQLEKEI
FT RAIEKSAGKRLTAYEEELLEELAYKLDVAKMNEEKQEKVPEETTFSISSDDFPALKEPQ
FT GVAVNENTEEDNEEIMIEVTGEIEEPIEFKTTHEEIAEPVINVANAHVVATPVVTLSVA
FT KSGTVIGKEKLIEKPKKTTWVAKPKISATVITTPSESAVWDAKPRLASALSTVEPVTKP
FT TVRACNDVIYIGAMACPIMMSSVESHIHQNEKLIESLDAQVDGATKEEEPVIKYNITFG
FT SFNYEVSAKGEQVQAAVKLDEMIEGLDTEPILICQTGSSHKHETKKAAKGLFVQDRFSV
FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGSYKNAALRLLKATKVQVFYDGIKDIFEC
FT PYCHVSSNELEGLNGDNCEKCKDLFYKHIDDPRKVEEEYLMVPLVPIDQHVHEEHSIIS
FT KAKWEAHESICEGEVNISKIFDGKPTASKKRFKTKQALNVANIPLDDFMQELVEICLER
FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFCHKNKLCLCGRIDREKKI
FT RSSEVRPGWSGVILHKNQVAECDWSKFVFIDDMCVVQGRNLITNKIENALEKKGSNRLK
FT QIQFYASSVIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCRTC
FT CFRVIKSKRIDVANALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATITNDDDMLRT
FT LGLGGDLYSGRLSLIMQHLQGLHTSISMLHQSLAGAQSDQQIDRQALHNQVRILHQSNE
FT EHMPFLKKAIDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSIHEFFPNIMSR
FT ANKAGVAVIKSETSLSKAFALMNSAKSMDAIHTLIGEDIIENVNGACLLKNDKTFFSIG
FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV
FT GFVNEDEMEFYKSQMNQVVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAN
FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKRVEGEILTYKVGGIYDWVTKKNAFID
FT LFEHHPENIFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF
FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN
FT IGLIAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFDEANDRAYGKQSWNLR
FT VIWGACKEVLYAVTRGAYVRVKGTTVRCADAVVYGFYGRTRAIVTSWASEAWGAIFTSC
FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGGGELYVEQHGKREEAFLFKICAIF
FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFTSFE
FT IEVPNVVLSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSG
FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG
FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK
FT KKIVKLSATHAGMDHECETRHKIKVETLSETPIESWVSMQGSGVVGDATSVGDVILVFV
FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT
FT FNIDVVVDFGEKISPNLSSDERCITLGRQRISRAE"
FT mat_peptide 140. .2413
FT /product="proteinase P1"
FT mat_peptide 2414. .3772
FT /product="helper component proteinase HC-Pro"
FT mat_peptide 3773. .4654
FT /product="P3 protein"
FT mat_peptide 4655. .4810
FT /product="6K1 protein"
FT mat_peptide 4811. .5866
FT /product="cytoplasmic inclusion protein CI"
FT gap 5868. .5967
FT /estimated_length=unknown
FT CDS <5968. .7473
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2SLM4"
FT /protein_id="ABO92960.1"
FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIRYVCNGDDLL
FT INCPRATASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDAEQMYIPKLD
FT KERIVAILEWERSDEQFRTGSALNAAYIGSFGYEDLMAEIEKFAHFWAKKHGLNDVLMD
FT REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQKEMEDLDADTTI
FT TVVQRETQKARIRDQIETLRAQQIVRPTEAQLQPDVNPTQIVTFEPPRVTGVGALWIPR
FT QQRNYMTTAYIEKIKAYVPHSNLIESGLASEAQLTSWIENTSRDYQVSMDVFMSAILPA
FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ
FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN
FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT mat_peptide 5968. .6564
FT /product="nuclear inclusion body protein NIb"
FT mat_peptide 6565. .7470
FT /product="coat protein CP"
FT 3'UTR 7476. .7781
XX
SQ Sequence 7781 BP; 2378 A; 1386 C; 1886 G; 2031 T; 100 other;
ef155971 Length: 7781 19-MAR-2010 Type: N Check: 9490 ..
1 taaataaaaa tgatatagag aaaatttgaa agaaaagtgt gaatttagca
51 aacttattcg caattcagtt ttactttaaa tactttatct caattttatc
101 gaactgtggt gtccgcttag aaacggatca gacgcagaaa tggggaaatc
151 caaactcact tacaaacaat gcattgcgaa gtggggaaaa gccgcacttg
201 aagctcaaaa taacgggtcg aaaaggagtg taactgttgg gactcatcaa
251 attgcggcaa atatttttgc gttttacgac gcaaaagact accatctatt
301 tgccatgggc aaaagaggtg gactgactcc agcagctgaa caattaagaa
351 ttgcaatcga gcgaggaacg atttacaaag tgcagtacga ctgtcacttc
401 tgtcccgatt gtgatgcaat tgtcgactct gaagaaggat ggttttgcga
451 ggattgcggt tcgcaattca ataagcgcga cgacaacgtg cttgataata
501 agaacgatgt cgcacgtgct cttggcggat ggactgaata cgaagacgcc
551 atctgggcgt cgtttgaggc tgctaaagct gatatgctcg aagttgcgcc
601 aactgtaggt cagcttgaga aagagatcag agccatagag aaatcagcgg
651 gtaaaaggct cactgcttac gaagaggaac tgcttgaaga gttggcctat
701 aagcttgatg tggccaagat gaatgaggaa aagcaagaaa aagtccccga
751 ggagactact ttctcaatct ccagtgacga ttttccggct cttaaggagc
801 cacaaggcgt ggcagttaat gaaaacactg aggaggataa tgaagaaatc
851 atgattgaag tcacgggaga gattgaagag cctatagagt ttaaaactac
901 ccatgaggaa attgctgaac cagttataaa cgttgctaac gcgcacgtag
951 tcgcgacacc tgtcgtgact ctaagtgtgg caaagtctgg aacagtaatt
1001 ggtaaggaga agctaattga aaaaccaaag aagaccacgt gggttgcaaa
1051 gccaaaaatt tctgctacag ttattactac gccgtctgag tcggctgtct
1101 gggatgctaa gccaaggcta gcatctgcac tttccactgt tgaaccagtt
1151 accaagccga cggtgagagc ttgcaatgat gtgatctata taggtgccat
1201 ggcgtgtcct atcatgatgt catcagttga atcacatatt catcaaaatg
1251 agaagctcat tgagtcccta gatgcacaag ttgatggcgc aacgaaggaa
1301 gaggaaccag tgatcaagta caatataact tttggttcat tcaattatga
1351 agtaagcgca aaaggggaac aagtgcaagc tgccgttaaa cttgacgaga
1401 tgatagaagg acttgacact gaacccattc tgatttgcca aacaggaagt
1451 tcccataaac atgaaaccaa gaaagctgca aaagggcttt tcgttcagga
1501 tagattttca gttattggga ataaggttct gtgcaagtcg tttcctgcct
1551 tcaagaattt catgaatgag acaaggttgg gagggattta tagaacaaga
1601 aaaggaagtt ataaaaacgc tgcgttgcgc ttattgaagg ccaccaaagt
1651 tcaagtattt tacgatggga taaaggacat ttttgaatgt ccttattgcc
1701 acgtgagcag taatgagcta gagggcctta atggagataa ttgcgaaaaa
1751 tgcaaggatc tgttttataa acacattgat gacccaagaa aagttgaaga
1801 ggaatatctt atggttcctc tcgtgcctat cgaccagcat gttcatgagg
1851 aacatagcat catcagtaag gctaaatggg aggctcatga atctatatgt
1901 gaaggagaag tgaacatttc taagattttt gatggcaaac cgactgcaag
1951 caagaagagg ttcaaaacta aacaagctct aaatgttgca aatataccac
2001 ttgacgattt tatgcaagaa cttgttgaaa tttgtcttga gagaaacacc
2051 cccattgaga tcattggggg tgtgaaatct tttaatgtgg ttaagttaag
2101 gcatactacg agagatatca gcaagtctgg tgaggatgac atgtatccaa
2151 ctgaaaggga gtggttctgc cacaagaata agctatgtct gtgtggtagg
2201 attgatcgtg agaagaaaat tagaagttcc gaggtgcgcc caggttggag
2251 tggagtaatc ttacataaga atcaagtggc ggagtgtgat tggagcaagt
2301 ttgttttcat tgatgatatg tgcgtggtgc aaggtagaaa cttgatcacg
2351 aataagattg agaatgctct tgaaaagaaa gggtctaata gacttaaaca
2401 gatacaattc tatgcaagtt ctgttatacc caacttcaag gatgaatttg
2451 acagagctag ccgtctaaaa gctgatcatg aaccggacga gtcgtctaac
2501 aatgaactca ttggtaggct ggctaaactt gttgcagcag tcattccaaa
2551 aggccaccta tattgcagaa catgctgttt tagggttatc aagagcaagc
2601 gcatagatgt agccaacgcg ctaaataagg ctaagcagcg tggtgaacgg
2651 gatgagttca tttatgatga gctcatcaaa ctctttgagc tacaagcacc
2701 accaccctat aagattgcaa caatcaccaa tgatgacgat atgttgcgaa
2751 cattaggatt gggtggagat ttatatagtg ggcgattgag tctcataatg
2801 caacacttgc aagggttgca tacgtcaata tcaatgcttc accaatcgct
2851 tgcgggggct cagagtgacc aacaaattga caggcaagcg ctccacaacc
2901 aagtgcggat tttacatcag agcaatgaag agcatatgcc tttcctgaag
2951 aaggcaatcg atgaaattca gctgttaaat gcgacagatc aggttgccaa
3001 tgctcgggaa ttgtacttgg atactagggc gactagtact ggggatttcg
3051 acatcttaag gaaatatcaa agcatacacg agttctttcc caatatcatg
3101 agccgagcca ataaagcagg ggtggcagtt atcaaatctg aaacatcatt
3151 gagcaaagcc tttgccctta tgaatagtgc taagtcaatg gacgctatcc
3201 atacgctcat aggggaagac atcatagaaa acgtcaatgg ggcttgctta
3251 ctaaagaatg ataagacgtt tttctcaatt ggttgcaagc aaggtgttga
3301 tggtagtaaa atgtatggtc cgctttgtcc gactaaacaa catgtaagaa
3351 ttcaccgagt tgaatctaac atgcaaattc ctttgccaac attccacgat
3401 gcaactgtct gggagtttaa tgaaggttat tgctatgcca atcaatttgc
3451 tataatggtt ggttttgtca atgaagacga aatggagttc tataagagcc
3501 aaatgaacca agttgtattg aacttagggg cttggccaac ttttgagcaa
3551 tatttaattg agctacgagc aatttcactt gactacccaa aagttagggg
3601 gtgcccagct gctattcatt tagtttctca tgcaaacaag cttattcatg
3651 ttttgggaca atttggaaca ataaatcaag gttggcatgc gcttgaagta
3701 gcaactgtag gcgaacttgt agacttgtgc cataagagag ttgaaggtga
3751 gattttgact tacaaagttg gtggcattta tgactgggtg actaaaaaga
3801 acgctttcat tgatctattt gaacaccatc cagaaaacat attcaaaatt
3851 tgcacatcac catcagtgtt gtggttattt gctcgcagct gcgaaaagca
3901 tgatttcatt aactacatca tggccagaga ccattcattg gtgggtttgt
3951 tcattaaatt ggaatatgtt ggcaaacatc ttcatatttt ccaaagtgtc
4001 gatgatgttt gtgttgaata cgcggcgtct atgagggaaa ttattgaaga
4051 gcacgctgat attcatgggt tgcgggactc agtggtggat agaatggttc
4101 acgcatatca caatgaggtg agagaagcaa ataagtatga gctagtcgat
4151 agaattcttg aaaaaaacat tggattaatc gcaaaagaaa tttcatcgcg
4201 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc
4251 agcgtttgaa gttaatgcca cactccttga atgcgcagaa actattcgac
4301 gaggcaaacg atcgtgcgta cggaaaacaa tcatggaatt tacgcgtgat
4351 ttggggtgcg tgcaaggaag tgttatatgc agtcacacgc ggagcttatg
4401 taagagtcaa aggaacaact gtgcgctgtg ccgacgccgt agtatatggc
4451 ttttatggta gaacacgagc gatagtcaca agctgggcta gtgaagcatg
4501 gggagcaatt tttacgtcgt gtctgagagc attagttgtt atggttgtca
4551 cggcatacat ctcaacttgg attcctaaaa ttaggaagat gattaagcgc
4601 gagaagaaac aatttgaaga gcttggaggc ggagagttgt atgtggagca
4651 acatggcaaa agagaggaag cgtttttatt caagatttgc gccatctttg
4701 cacttatagc aggcatagtt gattacgaat ggggagcagc tgcatgcgct
4751 acaatgaata aagttaagag tatatgcact gttcttggat ctgtcgggat
4801 tgagagtcac gctaatgagc ctgacgacaa agttgagcaa gacttaaagg
4851 agtcccttaa atttacatct tttgagattg aagtgccaaa cgtggttcta
4901 tcacaagatg atatgacttt tgaaaggtgg ttccaacatc agatccaata
4951 tggcaatgtg tgtgcggatc ctatctatag tggtccacta cgcatgctag
5001 caattacaga aaattctgcg agagagctgg caatgaacat tcgcacatca
5051 ggggaaactg acttgcgtgt ttatagtggc gttggtggag gaaaatcaac
5101 aaggttgccc aaggaactca gcatgtttgg gcatgtgcta atttgtgttc
5151 ctacgagagt tctggcggaa agcttattaa catcattcat ggtgcttttc
5201 aacatggatg ttaatgtagc ttatcgagga aggatacata ctggtaacgc
5251 accgatcaca ataatgactt atggttacgc attcaacttt ttggtgcaca
5301 aaccaatgga attgaaccga tatgattatg tgttgctaga tgaaattcat
5351 accaatcccg ttgaattcgc acctctattt tcttttatca aaaccacaga
5401 tccaaagaag aaaattgtta aactgtcagc aacccacgct ggaatggacc
5451 acgagtgtga aaccaggcac aagattaagg tagaaactct gagcgaaacg
5501 ccaattgaaa gttgggtttc catgcaaggc tctggggtcg ttggcgacgc
5551 aacatctgtt ggggacgtga ttttagtctt tgtcgcatct ttcaaggatg
5601 tcgacacatg tgctaatgga ctgcgatcta aaggcttcaa agttttgaaa
5651 gttgatagta gaaacttcag acgtgacgca gatgtggata aacaaattca
5701 atcactgggc gaagggaaga aattcatagt cgccacaaat atcattgaaa
5751 atggggtgac attcaacatt gatgttgttg ttgattttgg cgagaaaatc
5801 agccccaatc tctcgagcga tgagcggtgc atcacattag ggagacagag
5851 aatatcgcga gcagagannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5951 nnnnnnnnnn nnnnnnnggt aataatagtg gtcagccctc aacggttgtt
6001 gataacacgt tgatcttgat gattgccatg gaatatgcga tagccaaggt
6051 ttttgtcaca cgccctgaca tcaggtatgt ctgtaatggc gacgatctct
6101 tgattaattg tccaagggcc actgcaagcg ccattagtga acatttcaaa
6151 gatgcatttg cagatttaag cttgaactat gattttgatc atgtgtgtga
6201 caaaattaca gatgttgatt tcatgagtca tagcttcatg tggctagatg
6251 ccgagcagat gtatatacca aagttggaca aggagcggat tgtggcaatt
6301 ttggagtggg agaggagtga tgagcaattc agaacgggga gcgccctgaa
6351 tgctgcctat attgggagtt ttgggtatga agatttaatg gctgaaattg
6401 aaaaattcgc tcacttttgg gcaaaaaagc acggtcttaa tgacgtcttg
6451 atggatcgag agaaggttag agacttgtac gttaatgaag actttgatgc
6501 gtcagccttt gagaagttct atccggaaac attttcgcca tttgatgttt
6551 atgttgaacc acatgcatca acgtccaaga caatcgaaga actgcagaaa
6601 gaaatggagg atttggatgc agacacaaca attactgtgg ttcagaggga
6651 aacacagaag gcaaggataa gagaccaaat tgagacactt agggcacaac
6701 aaattgtgag acctactgag gcacagctac agcctgacgt aaatcccacg
6751 caaatagtca cgtttgaacc accgagagtc actggagttg gcgctttatg
6801 gattccgcgc caacaaagga actacatgac aacagcttac attgagaaga
6851 taaaggctta tgttccacat tcaaacttga tagaatctgg attagctagt
6901 gaagctcaat tgactagttg gatcgaaaac acgagcaggg actaccaagt
6951 tagtatggat gtcttcatga gtgcaatttt gccagcatgg attgtcaatt
7001 gcataatcaa tggaacatct caggagcgca ctaatgagca cacatggaga
7051 gctgtaatca tggcgaatat ggaagaccaa gaagtgcttt attaccccat
7101 caagcccata ataatcaatg ctcaaccaac tttgaggcag gtgatgcgtc
7151 attttggaga acaagccgtc gctcaataca tgaatagcct tcaagttgga
7201 aaacctttca cagtgaaagg tgccgtgact gctggttacg ctaacgttca
7251 agatgcttgg ctaggtatcg actttcttcg ggacacaatg cagttgacga
7301 caaaacagat ggaagttaag catcaaatta tcgcagcgaa cgttacaagg
7351 cggaaaatcc gtgttttcgc tcttgcagca ccgggggatg gcgatgaact
7401 ggacacagaa aggcacgtcg tcgacgatgt ggctaggggc cgtcatagtc
7451 tgagaggagc tcaactcgat taaatgagca cgttatcttt aatttcagct
7501 acgtgttttt atcttaatta tgtgttgtgc tttgtgtctg tttgttgtgg
7551 cacttgaacc aggtacagct ggcaggtgtt tcggcatggt gtggttagac
7601 aattggttcg caccggtggt ctaagaagcg ctatgtatca cgtggttggt
7651 taattcataa tttgtatgga tcaatcaaga agcgtctatg gcccagaagg
7701 gcaccagaaa atggttacgt cattcgtggc gtaatcaatt tttggagttt
7751 ggctaggtaa cttgtcgcct atccaaaagc c