Sequence of DPV Sweet potato mild mottle virus
Sweet potato mild mottle virus isolate R125MPG polyprotein gene, partial cds.
ACC No: EF155973
Dated: 2010-03-19 | Length: 7781 | CRC: -38608593
ID EF155973; SV 1; linear; genomic RNA; STD; VRL; 7781 BP.
XX
AC EF155973;
XX
DT 25-JAN-2010 (Rel. 103, Created)
DT 19-MAR-2010 (Rel. 104, Last updated, Version 2)
XX
DE Sweet potato mild mottle virus isolate R125MPG polyprotein gene, partial
DE cds.
XX
KW .
XX
OS Sweet potato mild mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
XX
RN [1]
RP 1-7781
RX PUBMED; 19923261.
RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.;
RT "Recombination and selection pressure in the ipomovirus sweet potato mild
RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in
RT the centre of evolution in East Africa";
RL J. Gen. Virol. 91(PT 4):1092-1108(2010).
XX
RN [2]
RP 1-7781
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (30-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, P.O. Box 27
RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .7781
FT /organism="Sweet potato mild mottle virus"
FT /host="Ipomoea cairica"
FT /isolate="R125MPG"
FT /mol_type="genomic RNA"
FT /country="Uganda:Mpigi"
FT /isolation_source="leaf"
FT /db_xref="taxon:41459"
FT 5'UTR 1. .139
FT CDS 140. .>5867
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2SLM7"
FT /protein_id="ACQ45598.1"
FT /translation="MGKPKLTYRQCIAKWGKAALEAQNNGSKRSVTVGTHQIAANVFAF
FT YDAKDYHLFTMGKRGGLTPAAEQLRIAIERGTIYNVQYNCHLCPDCDAIVDSEEGWYCE
FT DCGSQFNKRDDNVLENKNDVARALGGWTEYEDATWASFEAAKADMLEVAPTVGQLEKEI
FT RAIEKSAGKRLTAYEEELLEELAYKLDVAKMNEEEQEEATEETTFSISSDEFPTLEGPQ
FT DVEVNEITEEDTEEITIEVTGEIEKFIESKTTHEKNAEPVKNAVNAHVVATPVVTLSVA
FT KSGTVTSKEKLIEESKKIVWVTKPKTPATIPATPSESAVWDAKPRLASALPTVEPVTKP
FT PVEACNDVINIGAMVCPITVSSVESHSHQNEKLNESLDAQVDGATKEEEPVIKYNITFG
FT SFNYEVSAKGEQVQAAVQLDEMIEGPDIEPILICQTGSSHKHETKKAAKGLLVQDRFSV
FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGSYKNAALRLLKATKVQVFYDGIKDIFEC
FT PYCHVSSNELEGLNGDNCEKCKDLFYKHIDDPRKVEEEYLMIPLVPIDQHVHEEHSIIS
FT KAKWEAHESICEGEVNIFKVFDGKPTASKKKFKTMQALNVANIPLDDFMQELVEICLER
FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFYHKNKLCLCGGIDREKKV
FT RSSEVRPGWSGVILHRNQVAECDWSKFVFIDDMCVVQGRNLITDKVENALEKKGASRLK
FT QIQFYASSVIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC
FT CFRVIKSKRTDVVNALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATITNDDDMLRT
FT LGLGGDLYSGRLSLIMQHLQGLHTSISMLHQSLAGAQSDQQIDRQALHNQVRILHQSNE
FT EHMPFLKKAMDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSIYEFFPNIMSR
FT ANKAGVEVIKSETSLSKAFALMNSAKSMDAIHTLIGEDIIEHVNGACLLKNDKTFFSIG
FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV
FT GFVNEDEMEFYKSQMNQIVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAN
FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID
FT LFEHHPENIFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF
FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN
FT IGLIAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFDEANDRAYGKQSWNLR
FT VIWGACKEVLYAVTRGAYVRVKGTTVRCADAVVYGFYGRTRAIVTSWASEAWGAIFTSC
FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGGGELYVEQHGKREEAFLFKICAIF
FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFTSFE
FT IEVPNVVLSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSG
FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG
FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK
FT KKIVKLSATHAGMDHECETRHKIKVETLSEMPIESWVSMQGSGVVGDATSVGDVILVFV
FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT
FT FNIDVVVDFGEKISPNLSSDERCITLGRQRISRAE"
FT mat_peptide 140. .2413
FT /product="proteinase P1"
FT mat_peptide 2414. .3772
FT /product="helper component proteinase HC-Pro"
FT mat_peptide 3773. .4654
FT /product="P3 protein"
FT mat_peptide 4655. .4810
FT /product="6K1 protein"
FT mat_peptide 4811. .5866
FT /product="cytoplasmic inclusion protein CI"
FT gap 5868. .5967
FT /estimated_length=unknown
FT CDS <5968. .7473
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2SLM8"
FT /protein_id="ABO92962.1"
FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL
FT INCPRAVASAISEHFKDAFADLSLNYDFDHVCDSITDVDFMSHSFMWLDSEQMYIPKLD
FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMVEIEKFAHFWAEEHGLNDVLME
FT REKIKDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQQEMEDLDADTTI
FT TVVQRETQKARIREQIEALRAQQIVRPSEAQLQPDVTPTQIVTFEPPRVTGVGALWIPR
FT QQRNYMTPAYIEKIQAYAPHSNLIESGLASEAQLTSWFENTSRDYQVSMDVFMSAVLPA
FT WIVNCIINGTSQERTKEHTWRAVIMANMEDQEVLYYPIKPIIVNAQPTLRQVMRHFGEQ
FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN
FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT mat_peptide 5968. .6564
FT /product="nuclear inclusion body protein NIb"
FT mat_peptide 6565. .7470
FT /product="coat protein CP"
XX
SQ Sequence 7781 BP; 2391 A; 1385 C; 1875 G; 2030 T; 100 other;
ef155973 Length: 7781 19-MAR-2010 Type: N Check: 5425 ..
1 aaaataaaaa tgatatagag aaaatttgaa agacaagtat gaatatagct
51 aacttatccg caactcagtt ttattttaaa gactttatct caattttatc
101 gacctgtggt gtccgcttag aaacggatca cacgcagaaa tggggaaacc
151 caaactcact tacagacaat gcattgctaa gtggggaaaa gccgcacttg
201 aagcgcaaaa taacggatcg aaaagaagtg tcactgttgg cactcaccaa
251 atcgcggcaa atgtttttgc gttctatgac gcaaaagact accatctttt
301 taccatggga aaaagaggtg gattgactcc agcagctgag caattgagaa
351 tcgccatcga acgaggaaca atttataacg tgcagtacaa ctgccactta
401 tgtcctgatt gcgatgcaat tgtcgattct gaggagggat ggtattgtga
451 ggattgcggt tcgcaattca acaagcgcga tgacaacgta cttgaaaata
501 aaaatgatgt cgcacgcgct cttggcggtt ggactgaata cgaagacgcc
551 acctgggcgt cgtttgaagc tgctaaagct gatatgcttg aagttgcacc
601 aactgtaggt caacttgaga aagaaatcag agccatagaa aaatcagcgg
651 gtaaaagact cactgcttac gaggaggaat tgcttgaaga gctagcctat
701 aagcttgatg tggccaaaat gaatgaggaa gagcaagaag aagccaccga
751 ggagactact ttctcaatct ccagtgacga atttccaact ctcgaggggc
801 cacaggacgt ggaagttaat gaaattactg aggaagatac tgaagaaatc
851 acgattgaag tcacgggaga gattgaaaag tttatagagt ctaaaactac
901 acatgagaaa aatgctgaac cagttaaaaa cgctgttaac gcgcatgtgg
951 tcgcgacacc tgttgtgact ctaagtgtgg ccaagtctgg gacagtaact
1001 agtaaggaga agttaattga agaatcaaag aaaattgtgt gggtaacaaa
1051 gccaaaaact cctgctacaa ttcctgccac gccgtctgag tcggctgtct
1101 gggatgctaa gcccaggcta gcatccgcac ttcccactgt tgaaccagtt
1151 accaagccac cggtggaagc ttgcaatgat gtgatcaata taggtgccat
1201 ggtgtgtcct atcacggtgt catcagttga atcacatagc caccaaaatg
1251 agaagctcaa tgagtcctta gatgcacaag ttgatggcgc aacgaaggaa
1301 gaggaaccag tgatcaagta caatataact tttggctcat tcaattatga
1351 agtaagcgct aaaggggaac aagtgcaagc tgctgttcaa cttgatgaga
1401 tgatagaagg acctgacatt gaacccattc tgatttgcca gacaggaagt
1451 tcccataaac atgaaaccaa gaaagccgca aaagggcttc tcgttcagga
1501 tagattttca gttattggga ataaggttct gtgcaagtcg tttcctgcct
1551 tcaagaattt catgaatgag acaagattag gaggaattta cagaacaaga
1601 aaaggaagtt ataaaaacgc tgcattgcgt ttattgaagg ccaccaaagt
1651 tcaagtcttt tatgatggca taaaggatat tttcgagtgt ccatattgcc
1701 acgtgagcag taatgaactg gagggtctta atggagataa ttgtgaaaaa
1751 tgcaaagatc ttttttacaa acacattgat gatccaagga aagttgagga
1801 ggaatatctt atgattcctc tcgtgcccat cgatcagcat gtgcatgaag
1851 aacatagcat cattagtaag gctaaatggg aagctcacga atctatatgt
1901 gaaggagaag tgaatatttt taaggttttt gatggcaaac ctactgcaag
1951 caagaagaaa ttcaaaacaa tgcaagcact gaatgtcgca aatataccgc
2001 ttgatgactt tatgcaagaa ttagttgaaa tttgtcttga gagaaacact
2051 cctattgaaa tcattggggg tgtgaagtct tttaatgtgg ttaagttaag
2101 gcacactacg agagatatta gcaagtctgg tgaagatgat atgtatccaa
2151 ctgaaaggga atggttctat cacaagaata aactatgtct gtgtggtgga
2201 attgatcgtg agaagaaagt cagaagttcc gaggtgcgtc caggttggag
2251 tggagtgatc ttacatagga atcaagtggc ggaatgcgat tggagcaagt
2301 ttgttttcat tgatgacatg tgcgtggtgc aaggtagaaa cctgatcacg
2351 gataaggttg agaatgcgct tgaaaagaag ggggccagta gacttaagca
2401 gatacaattc tatgcaagtt ctgttatacc caacttcaag gacgaattcg
2451 acagagctag tcgtctaaaa gctgatcacg aaccagacga gtcgtctaac
2501 aatgaactca ttggtaggct ggctaaactt gttgcagcag tcattccaaa
2551 aggccaccta tattgcaaaa catgctgttt tagggttatc aagagcaagc
2601 gcacagatgt agttaacgca ctaaataagg ctaagcagcg tggtgaacgg
2651 gatgagttca tttatgatga gctcataaaa ctgtttgagc tacaagcacc
2701 accaccgtat aagattgcaa cgatcaccaa cgatgacgat atgttgcgaa
2751 cattaggatt gggtggagac ctatatagtg ggcgactgag tctcataatg
2801 caacacttgc aagggttgca tacgtctata tcaatgcttc accaatcgct
2851 tgcgggagct cagagtgacc aacaaattga caggcaagcg ctccacaacc
2901 aagtgcgaat tttacatcaa agcaatgagg agcatatgcc tttcctgaag
2951 aaggcaatgg atgaaattca gcttttaaat gcaacagatc aggttgcaaa
3001 tgctcgggaa ttgtacttgg atactagggc gactagtact ggggatttcg
3051 acatcttacg aaaatatcaa agcatatatg agttctttcc caatatcatg
3101 agccgagcca ataaagcagg ggtggaagtt attaaatctg aaacatcatt
3151 gagcaaagct tttgccctta tgaatagtgc taagtcgatg gacgctattc
3201 atacgctcat aggggaagac atcatagaac acgttaatgg ggcttgctta
3251 ctgaagaacg ataagacgtt tttctcaatt ggttgcaagc aaggtgttga
3301 tggtagcaaa atgtatggcc cgctttgtcc gactaagcag catgtaagaa
3351 ttcaccgggt tgaatctaac atgcaaattc ctttgccaac attccacgat
3401 gcaactgtct gggagtttaa cgaaggttat tgctacgcta atcaatttgc
3451 tataatggtt ggttttgtca atgaagacga aatggagttt tataagagcc
3501 aaatgaacca aattgtgttg aacttagggg cttggccaac ttttgagcaa
3551 tatttaattg agctacgagc aatctcgctt gactacccaa aagtcagagg
3601 gtgtccagct gctattcatt tagtttctca tgcaaacaag cttattcatg
3651 ttttgggaca atttggaaca ataaatcaag gttggcatgc acttgaagta
3701 gcaactgtgg gcgagcttgt agacttgtgc cataagaaag ttgaaggtga
3751 gatgttaact tacaaagttg gtggcattta tgactgggtg actaaaaaga
3801 atgctttcat tgatctattt gaacaccatc cagaaaacat attcaaaatt
3851 tgcacatcac catcagtgtt gtggttattt gctcgcagct gcgaaaagca
3901 tgatttcatc aactacatca tggccagaga ccattcattg gtgggtttgt
3951 tcattaaatt ggaatatgtt ggcaaacatc ttcatatttt ccaaagtgtc
4001 gatgatgttt gtgttgagta cgcggcgtct atgagggaaa ttattgaaga
4051 gcacgctgat attcatgggc tgcgggattc agtggtggat agaatggttc
4101 acgcatatca caatgaggtg agagaagcaa ataagtatga gctagttgat
4151 agaattcttg aaaaaaacat tggattaatc gcaaaagaaa tttcatcgcg
4201 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc
4251 agcgtttgaa gttaatgcca cactccttga atgcgcagaa actattcgac
4301 gaggcaaacg atcgtgcgta cggaaaacaa tcatggaatt tacgcgtgat
4351 ttggggtgcg tgcaaggaag tgttatatgc agtcacacgc ggagcttatg
4401 taagagtcaa aggaacaact gtgcgctgtg ccgacgccgt agtgtatggc
4451 ttttatggta gaacacgagc gatagtcaca agttgggcta gtgaagcatg
4501 gggagcaatt tttacgtcgt gtctgagagc attagttgtt atggttgtca
4551 cggcatacat ttcaacttgg attcctaaaa ttaggaagat gattaagcgt
4601 gagaagaaac aatttgaaga acttggaggc ggagagttat atgtggagca
4651 acatggcaaa agagaggaag cgtttttatt caagatttgc gccatctttg
4701 cacttatagc aggcatagtt gattacgaat ggggagcagc tgcatgcgct
4751 acaatgaata aagttaagag tatatgcact gtccttggat ctgttgggat
4801 tgagagccac gctaacgaac ctgatgataa agttgagcag gacttaaagg
4851 aatcgcttaa atttacatct ttcgaaattg aagtaccaaa cgtggttcta
4901 tcacaagatg atatgacttt tgaaaggtgg tttcaacatc aaatacaata
4951 tggcaacgtg tgtgctgacc ctatctatag tggtccgcta cgcatgctag
5001 caattacaga aaattctgca agagagctag caatgaacat tcgcacatca
5051 ggggaaactg acttgcgtgt ttatagtggc gttggtggag gaaaatcaac
5101 aaggttaccc aaggaactta gcatgtttgg gcatgtgcta atttgtgttc
5151 cgacgagagt tttggcagaa agcttgttaa catcattcat ggtactattt
5201 aatatggatg ttaatgtggc ttatcgagga aggatacaca ctggtaacgc
5251 accaatcaca ataatgactt atggttatgc attcaacttc ttggtgcata
5301 aaccaatgga attgaaccga tatgattatg tgttactaga tgaaattcac
5351 accaatcctg ttgaattcgc acctctgttc tctttcatca aaactacgga
5401 tccaaagaag aagattgtta agctgtcagc aacccacgct ggtatggacc
5451 acgagtgtga aaccaggcac aagattaaag tagaaaccct gagcgaaatg
5501 ccaattgaaa gctgggtttc catgcaaggt tctggggttg ttggtgacgc
5551 aacatctgtt ggtgatgtga ttttggtctt tgtggcatca tttaaggatg
5601 tcgatacatg tgccaatgga ctgcgatcta aaggcttcaa agttctgaag
5651 gttgatagta gaaacttcag acgtgatgca gatgtggata agcaaatcca
5701 atcattgggt gaagggaaga aattcatagt cgccacaaat atcattgaaa
5751 atggagtgac atttaacatt gatgttgtcg ttgattttgg cgagaaaatt
5801 agccctaatc tttcgagcga tgaacgatgt atcacactag ggaggcagag
5851 aatatcgaga gcagaaannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5951 nnnnnnnnnn nnnnnnnggt aataatagtg ggcagccctc aacagttgtc
6001 gataacacgt tgatcttgat gattgcgatg gagtatgcga tagctaaggt
6051 ttttgtcaca cgccctgaca tcaagtatgt ctgtaatggg gatgacctct
6101 taattaattg cccgagggct gttgcaagcg ccattagtga gcatttcaaa
6151 gatgcattcg cagacttaag cttgaactat gattttgatc acgtttgtga
6201 ttcaattaca gacgttgatt ttatgagtca cagcttcatg tggttagatt
6251 ctgagcaaat gtatataccg aagctggaca aggagcgaat cgtggcaata
6301 ttggagtggg aaagaagtga tgagcaattc agaacaagga gcgccctgaa
6351 cgctgcttat attgaaagtt ttggatatga agatttgatg gttgagattg
6401 agaaatttgc tcacttttgg gctgaagagc atggtctcaa tgacgtcttg
6451 atggagcggg agaaaattaa agacttgtac gttaatgaag actttgatgc
6501 gtcagccttt gagaagttct atccggaaac attttcacca tttgacgttt
6551 atgttgaacc acatgcatcg acgtccaaga caatcgaaga attgcagcaa
6601 gaaatggagg atttggatgc agacacaaca atcactgtgg tccaaaggga
6651 aacacagaag gcaaggataa gagaacaaat cgaggcactt agggcacaac
6701 aaattgtgag accttctgaa gcacagcttc agcctgacgt aactcccact
6751 caaatagtca cgtttgaacc accaagagtc actggagttg gcgctttatg
6801 gattccgcgc caacaaagaa actacatgac gccagcttac atcgagaaga
6851 tacaggctta tgctccacat tcaaacttga tagaatctgg actagctagt
6901 gaagctcagt tgactagttg gttcgagaac acaagtaggg attaccaagt
6951 tagtatggat gttttcatga gtgcagtact gccagcatgg attgtcaatt
7001 gcataatcaa tggaacgtct caggagcgca ctaaggagca cacatggagg
7051 gctgtaatca tggcgaatat ggaggaccaa gaggtgcttt attaccctat
7101 caagcccata attgtaaatg ctcagccaac tttgaggcag gtgatgcgcc
7151 atttcggaga acaagccgtt gctcaataca tgaacagcct tcaagttgga
7201 aagcctttta cagtgaaagg tgccgtgact gctggttacg ctaacgttca
7251 agatgcttgg ctaggtatcg actttcttcg ggacacaatg cagttgacga
7301 caaaacagat ggaagttaag catcaaatta ttgcagcgaa cgtcacaagg
7351 cggaaaatcc gtgttttcgc tcttgcagca ccgggagatg gcgacgaact
7401 agacacagaa aggcacgtcg tcgacgatgt ggctaggggc cgtcatagtc
7451 tgagaggagc tcaactcgac taaatgagca cgttatcttt aatttcaact
7501 acgtgttttt atcttaatta tgtcttgtgc tttgtgtttg tttgttgtgg
7551 cacttgaacc aggtacagct ggcaagtgtt tcggcatggt gtggttagac
7601 aattggttcg caccggtggt ctaagaagcg ctatgtatca cgtggttggt
7651 tagttcataa cttgtatgga ttaatcaaga agcgtctatg gcccagaagg
7701 gcaccagaaa atggttacgt cattcgtggc gtaatcaatt tttggagttt
7751 ggctaggtaa cttgtcgcct atccaaaagc c