Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus isolate 9MBR polyprotein gene, partial cds.

ACC No: EF155974

Dated: 2010-11-19 | Length: 1814 | CRC: 8776318

                
ID   EF155974; SV 1; linear; genomic RNA; STD; VRL; 1814 BP.
XX
AC   EF155974;
XX
DT   05-OCT-2010 (Rel. 106, Created)
DT   19-NOV-2010 (Rel. 106, Last updated, Version 2)
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DE   Sweet potato feathery mottle virus isolate 9MBR polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1814
RX   PUBMED; 20609081.
RA   Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.;
RT   "Molecular genetic analysis of virus isolates from wild and cultivated
RT   plants demonstrates that East Africa is a hotspot for the evolution and
RT   diversification of Sweet potato feathery mottle virus";
RL   Mol. Ecol. 19(15):3139-3156(2010).
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RN   [2]
RP   1-1814
RA   Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT   ;
RL   Submitted (30-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Applied Biology, University of Helsinki, P.O. Box 27
RL   (Latokartanonkaari 7), Helsinki FIN-00014, Finland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1814
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /host="Ipomoea indica (Ipomoea acuminata)"
FT                   /isolate="9MBR"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Mbarara"
FT                   /isolation_source="leaf"
FT                   /db_xref="taxon:12844"
FT   CDS             <1. .1593
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:E1U267"
FT                   /protein_id="ABO92936.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAVHYTLLKLGIRESEFDKCCVFFANG
FT                   DDLLLAMRPDTAHLLDKFGECFSELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKL
FT                   EPERIVSILEWDRSHEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELAR
FT                   NGKAPYIAETALKALYTGIQPSISELSVYTRVLNEMYDDSMLQENELEVYHQSSEKTEF
FT                   KDAGANPPSPKSKINPPPPTITEIVDPEDPKQAALKAARAKQPATIPESYGRDTSKEKE
FT                   SIVGTSSKGVRDKDVNVGTVGTFVVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQY
FT                   EVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDG
FT                   DEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLA
FT                   RYAFDFYELHSTTPARAKEAHLQMKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVT
FT                   RNIHNLLGMRGVQ"
FT   mat_peptide     <1. .645
FT                   /product="nuclear inclusion body protein"
FT                   /note="NIb"
FT   mat_peptide     646. .1590
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1594. .1814
XX
SQ   Sequence 1814 BP; 572 A; 330 C; 424 G; 488 T; 0 other;

ef155974 Length: 1814  19-NOV-2010  Type: N  Check: 7800  ..

       1  ggtaataata gtgggcagcc atctactgtg gttgataata cacttatggt
      51  tgtgttagca gttcactaca cattgctgaa attaggaatc cgagaaagcg
     101  agtttgataa atgctgtgtc tttttcgcaa atggtgatga tttattattg
     151  gcaatgaggc cggatacagc tcatttactg gataagttcg gcgaatgttt
     201  ttctgaatta ggactcaatt atgacttttc atcacgaaca aataagaagg
     251  aagatctatg gtttatgtca cactgtggcg tgaaacgtga tggaatattt
     301  attccgaagt tggagcctga aaggattgtt tcaattcttg aatgggatcg
     351  ttcacacgag ccaattcatc gactggaagc aatatgtgcc gcgatggtgg
     401  aatcatgggg ttatgatgaa cttcttcatc atattaggaa attctatgca
     451  tgggttttgg accaagcccc atacaacgaa ctagcacgaa atgggaaagc
     501  accatacata gctgaaactg cactcaaagc actctatact ggtattcaac
     551  ctagtatttc tgaactgagt gtgtacacaa gagtgcttaa tgaaatgtac
     601  gacgatagta tgcttcaaga gaatgagttg gaagtatatc atcaatctag
     651  tgagaagact gaatttaaag atgctggagc caaccctcca tcccctaagt
     701  ctaagatcaa tcctccacca cccacaataa ctgagatcgt tgatccggag
     751  gacccgaagc aagcagctct aaaagctgca cgagcaaagc aacccgcaac
     801  tattccagaa tcatatgggc gtgatacgag caaagaaaag gaatcaatag
     851  taggaacatc atcaaagggt gtgagagata aagacgtgaa tgttggcaca
     901  gttggtacat ttgttgtacc acgtgttaag atgaatgcaa ataagaagag
     951  acaaccaatg gtcaatggaa gggccatcat aaatttccaa cacttgtcaa
    1001  catatgaacc agagcagtat gaagttgcga acacccgttc gactcaagaa
    1051  caattccaag catggtatga gggagttaaa ggggattacg gtgttgacga
    1101  cacaggaatg gggatcttat tgaatggact aatggtttgg tgcattgaaa
    1151  atggcacatc cccaaatata aatggtgtgt ggacaatgat ggacggtgat
    1201  gagcaagtga catatccaat taaaccatta ttggatcatg cagtgcctac
    1251  ttttaggcag attatgacgc acttcagtga cgttgctgaa gcctatatag
    1301  aaatgcgaaa ccgtacaaag gcgtacatgc caagatatgg tctacaacgt
    1351  aatttgactg atatgagtct tgcgcgatat gcatttgatt tttacgagct
    1401  gcattcaact acacctgcac gtgctaaaga agcacattta cagatgaagg
    1451  cagccgcact taagaatgcg cgaaatcggt tgtttggttt ggacggaaac
    1501  gtctccacgc aagaagaaga tacggagagg cacacgacaa ctgatgttac
    1551  tagaaatata cataacctct taggaatgag gggtgtgcaa taggacatcc
    1601  tctgcactgt agcttatact tatgttattt ttagtatgcc tttaatttaa
    1651  attcgtgtct ttcagtcccg aaggagatgg ttggatgcat aacatggtgg
    1701  gattatatct cggttattgc atttgagaag tcacctttct attacgtatc
    1751  ataagggact cttaaaagtg aggagtacct cgtaagaaaa gcctttttgg
    1801  ttcgtgatcg agcc