Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus isolate 15KAP polyprotein gene, partial cds.
ACC No: EF155983
Dated: 2010-11-19 | Length: 4224 | CRC: 2009670392
ID EF155983; SV 1; linear; genomic RNA; STD; VRL; 4224 BP.
XX
AC EF155983;
XX
DT 05-OCT-2010 (Rel. 106, Created)
DT 19-NOV-2010 (Rel. 106, Last updated, Version 2)
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DE Sweet potato feathery mottle virus isolate 15KAP polyprotein gene, partial
DE cds.
XX
KW .
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OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-4224
RX PUBMED; 20609081.
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.;
RT "Molecular genetic analysis of virus isolates from wild and cultivated
RT plants demonstrates that East Africa is a hotspot for the evolution and
RT diversification of Sweet potato feathery mottle virus";
RL Mol. Ecol. 19(15):3139-3156(2010).
XX
RN [2]
RP 1-4224
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (30-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, P.O. Box 27
RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .4224
FT /organism="Sweet potato feathery mottle virus"
FT /host="Hewittia sublobata"
FT /isolate="15KAP"
FT /mol_type="genomic RNA"
FT /country="Uganda:Kapchorwa"
FT /isolation_source="leaf"
FT /db_xref="taxon:12844"
FT CDS <1. .4002
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="UniProtKB/TrEMBL:E1U276"
FT /protein_id="ABO92945.1"
FT /translation="GATSCVLHQTKDALSKHLRLKGVWNKSVITQDLFILAGVFAGGLW
FT MIMAGLKESFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK
FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQEKIGE
FT ARLNAIKEDELSREKVAQNPGIHAYYVNEITNAALKVDLTPHNPLLACERHSTIAGHPE
FT YEGVLRQTGPPIKMTLTDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG
FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIKSRHGEFVIKNTTQLGMKPCADRDILIIR
FT MPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID
FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS
FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTRSDRWVQDRLHGNLKAVGR
FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSKLNKEAYNKDLFKYATQ
FT IQAGDVQVDTFELAERSVVSMLTSKGFEKCSYITDPEEILKALNMKAAVGAMYSGKKKD
FT YFEGMSDHDVENHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL
FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL
FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST
FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDQFSECFS
FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA
FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA
FT SELSVYTRVLKEMYDDSMLQENDLEVYHQSNERTEFKDAGANPPAPKPKDIPPPLTITE
FT ITDPEDPKQAALKAARAKQPAVTPESYGRDTSKERESIVGTSSKGVRDKDVNVGTVGTF
FT VVPRVKMNANKKRQPMVNGRAIINFQHLSIYEPEQFEVANTRSTQEQFQAWYEGVKGDY
FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM
FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ
FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT mat_peptide <1. .27
FT /product="cytoplasmic inclusion protein"
FT /note="CI"
FT mat_peptide 28. .186
FT /product="6K2 protein"
FT mat_peptide 187. .762
FT /product="VPg protein"
FT mat_peptide 763. .1491
FT /product="NIa-Pro protein"
FT mat_peptide 1492. .3054
FT /product="nuclear inclusion body protein"
FT /note="NIb"
FT mat_peptide 3055. .3999
FT /product="coat protein"
FT /note="CP"
XX
SQ Sequence 4224 BP; 1367 A; 769 C; 979 G; 1109 T; 0 other;
ef155983 Length: 4224 19-NOV-2010 Type: N Check: 1807 ..
1 ggagccacct cttgtgtgct tcatcaaaca aaagatgcac tctcaaagca
51 ccttcgtttg aaaggagtgt ggaataaatc agtcatcaca caggatttgt
101 tcattttagc aggggtattt gctggtggtt tgtggatgat aatggcgggg
151 ctaaaggaat catttgatca aactgtgctg caccaaggaa aagaaaagcg
201 ccaaatgcaa aagctgaagt ttaggaaagc gcgagataat aaacttggat
251 tcgaagtaca cgctgatgat ggaactatcg aacacttctt tggtagtgca
301 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcaaa
351 gaacaggaaa tttataaaca tgtacggatt tgatcccact gaatattcct
401 ttgtccgatt tgttgacccg ctaactggag ctgtgataga tgattctcca
451 tatacagata ttcttcttgt tcaggagaag attggtgagg ctcgtttgaa
501 tgccatcaaa gaagatgaac tttcaagaga gaaagttgca caaaatccag
551 gaattcatgc atactatgtc aatgaaatca caaatgctgc actcaaagtt
601 gatcttacac cgcacaatcc attacttgca tgtgaaagac atagcaccat
651 tgccggtcat cctgaatatg aaggagtttt gagacaaacc ggacccccaa
701 ttaagatgac acttactgac gtgccagtaa atcctgaaga ggcaagttta
751 gtcgggcatg agagtaagtc actattcaga ggcttaaggg attacaaccc
801 aatagcaagt gttatatgtc acctaatgaa tgaagcggat gggagaacaa
851 gcgactgctt tggaatcgga tacggtggtc tcattataac aaataggcat
901 cttttcaaaa ggaacaatgg cacattaaca attaaatctc gacatggaga
951 atttgttatc aagaacacaa cccaacttgg gatgaaacct tgtgctgaca
1001 gagacatact catcattagg atgcctaagg atatacctcc gtttccacaa
1051 cgcctgaaat ttagggttcc aaaagaaaat gaaagaatct gcttggttgg
1101 atcaaatttt caggataaat caatcacaag tacgatttct gaaaccagcg
1151 taacgtgcca tgtgccaaat tcgcattttt ggaagcactg gatcgataca
1201 aaagatggac attgtggtct tcccttagta agtactactg atggtgcttt
1251 gttgggagtg catagcctat caaatttgac gaacactcag aatttctttg
1301 catcatttcc tgagaacttt gaagtggact atttgaaaac tcctgaggca
1351 atggattgga taaagaagtg gagttataat ccagatgaaa tttgttgggg
1401 aacgctggaa ctgaagacag gacaacccgt tgccccattc aaagtgtcca
1451 aactaatcac ggacttagaa ggcatacaag tgtatgctca aacaaggtca
1501 gatagatggg ttcaagatag actacatggc aatcttaaag cagttggtcg
1551 atgtcctgca caattggtta ctaagcacgt tgtaaaggga aaatgcatgc
1601 tatttgacct atatttgcag caagatcaat ctgaaaggga gtatttcaaa
1651 cctcttatgg gagcatacgg gaaaagtaag ctcaacaaag aggcgtataa
1701 taaggatttg tttaagtatg cgacacaaat tcaggcagga gatgtgcaag
1751 tggatacgtt cgaattggcg gaaagatctg ttgtttccat gctcacatca
1801 aaaggatttg aaaagtgcag ctacatcaca gatccagagg aaattctgaa
1851 agcactgaat atgaaagctg cagtcggtgc gatgtacagt ggaaagaaga
1901 aggattactt tgaaggaatg agtgatcacg atgtagaaaa ccatcttttc
1951 cacagttgca agcgtttgtt catgggacac aaaggtcttt ggaatggatc
2001 cttgaaagct gagttgagac ctatggaaaa agtggaactt aacaaaacaa
2051 gaaccttcac agcggctcct cttgacacgt tacttggtgg taaggtgtgt
2101 gtagacgatt tcaataacat gttttacaac caccatttaa aatgtccatg
2151 gacggtagga ataaccaaat tctaccaagg atgggatagg cttctcacat
2201 ctctacctga gggatgggtt tattgtgacg ctgatggctc gcaatttgat
2251 agttctctct ctccatattt gattaactca gttcttaata taagaagaga
2301 atttatggag gattgggatg ttggtgatca aatgcttcgg aatttataca
2351 cagaaatagt gtacacacca atactgacac cagatggaac catagtgaag
2401 aagttcaaag gtaacaacag tggacagcca tccactgtgg ttgataatac
2451 acttatggtt gtgttagcag ttcactacac actactgaaa ctaggaatcc
2501 aagaaagtga gtttgataaa tgctgtgtct ttttcgcaaa tggtgatgat
2551 ttattgttgg caatgaggcc agatacagcc catttattgg accagtttag
2601 tgaatgtttt tctgaattag gactcaatta tgacttttca tcacgaacaa
2651 ataagaaaga agatctatgg tttatgtcac actgtggcgt gaaacgtgat
2701 ggaatattca ttccaaagtt ggagcctgaa aggattgttt caattcttga
2751 atgggatcgt tcacacgaac caattcatcg gctggaagca atatgtgccg
2801 cgatggtaga atcgtggggt tatgatgaac ttcttcatca tattagaaaa
2851 ttctatgcat gggttttgga ccaagcccca tacaatgaac tagcacgaaa
2901 tggaaaagca ccatacatag ctgaaactgc actcaaagca ctttatactg
2951 gtgttcaacc taatgcttct gaattgagtg tgtatacgag agtgctcaaa
3001 gaaatgtatg atgacagcat gctccaagag aatgatttgg aagtatatca
3051 tcaatctaat gagagaactg aatttaaaga tgcaggagcg aaccctccag
3101 cccctaagcc taaggacatt cctccaccac tcacaataac tgaaatcact
3151 gatccagagg acccgaagca ggcagctttg aaagctgcac gagcaaagca
3201 acccgcagtc actccagaat catatggacg agatacgagc aaagaaaggg
3251 agtcaatagt ggggacatca tcaaagggcg tgagggataa agatgtgaat
3301 gttggcaccg ttggtacgtt cgttgtgcca cgtgtcaaga tgaatgcaaa
3351 caagaaaagg caaccaatgg tcaatggaag ggccattata aatttccagc
3401 acttgtcaat atatgaacca gagcagtttg aggttgcaaa cacccggtcg
3451 actcaagagc aattccaagc atggtatgag ggagttaaag gggattacgg
3501 tgttgacgac acaggaatgg ggatcttatt gaatggacta atggtttggt
3551 gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg
3601 gacggtgatg agcaagtgac atacccaatt aaaccattat tggatcatgc
3651 agtgcctact tttaggcaga tcatgacgca cttcagtgac gttgctgaag
3701 cctatataga aatgcgaaac cgtacaaagg cgtacatgcc aaggtatggt
3751 ctacaacgta atttgactga tatgagtctt gcgcgatatg catttgattt
3801 ttacgagctg cattcaacta cacctgcacg tgctaaagaa gcacatttac
3851 agatgaaggc agctgcactt aagaatgcgc gaaatcggtt gtttggttta
3901 gacggaaacg tctccacgca agaagaagat acggagaggc acacgacaac
3951 tgatgttact agaaatatac ataacctctt aggaatgagg ggtgtgcaat
4001 aggacatcct ctgcactgta gcttatactt atgttatctt tagtatgcct
4051 ttaatttaaa ttcgtgtctt tcagtcccga aggagatggt tgagtgcata
4101 acatggtggg attatatctc gggttattgc atttgagaag tcacctttct
4151 attacgtatc ataagggact cttaaaagtg aggagtacct cgtaagaaaa
4201 gcctttttgg ttcgtgatcg agcc