Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus isolate R10LUW polyprotein gene, partial cds.
ACC No: EF155984
Dated: 2010-11-19 | Length: 4223 | CRC: -1816046707
ID EF155984; SV 1; linear; genomic RNA; STD; VRL; 4223 BP.
XX
AC EF155984;
XX
DT 05-OCT-2010 (Rel. 106, Created)
DT 19-NOV-2010 (Rel. 106, Last updated, Version 2)
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DE Sweet potato feathery mottle virus isolate R10LUW polyprotein gene, partial
DE cds.
XX
KW .
XX
OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-4223
RX PUBMED; 20609081.
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.;
RT "Molecular genetic analysis of virus isolates from wild and cultivated
RT plants demonstrates that East Africa is a hotspot for the evolution and
RT diversification of Sweet potato feathery mottle virus";
RL Mol. Ecol. 19(15):3139-3156(2010).
XX
RN [2]
RP 1-4223
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (30-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, P.O. Box 27
RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .4223
FT /organism="Sweet potato feathery mottle virus"
FT /host="Ipomoea indica (Ipomoea acuminata)"
FT /isolate="R10LUW"
FT /mol_type="genomic RNA"
FT /country="Uganda:Luwero"
FT /isolation_source="leaf"
FT /db_xref="taxon:12844"
FT CDS <1. .4002
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="UniProtKB/TrEMBL:E1U277"
FT /protein_id="ABO92946.1"
FT /translation="GATSCVLHQTKDSLSKHLGLKGVWNKSVITQDLLILAGVFAGGIW
FT MIMAGVKDSFDQTVLHQGREKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK
FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQERIGE
FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE
FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADG
FT RTSDCFGIGYGGLIVTNRHLFKRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIR
FT MPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID
FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS
FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTRSERWVQDRLYGNLKAVGQ
FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ
FT IQAGDVQVDTFELAERSVISMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD
FT YFEGMSDYDVEDHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL
FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL
FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST
FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS
FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA
FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA
FT SELSAYTRVLKEMYDDSMLQENDLEVYHQSNERTEFKDAGADPPAPKPKNVPPPPTITE
FT ITDPEDPKQEALKAARAKQPAVIPESYGRDTSKERESIVGASSKGVRDKDVNVGTVGTF
FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY
FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM
FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ
FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT mat_peptide <1. .27
FT /product="cytoplasmic inclusion protein"
FT /note="CI"
FT mat_peptide 28. .186
FT /product="6K2 protein"
FT mat_peptide 187. .762
FT /product="VPg protein"
FT mat_peptide 763. .1491
FT /product="NIa-Pro protein"
FT mat_peptide 1492. .3054
FT /product="nuclear inclusion body protein"
FT /note="NIb"
FT mat_peptide 3055. .3999
FT /product="coat protein"
FT /note="CP"
FT 3'UTR 4003. .4223
XX
SQ Sequence 4223 BP; 1364 A; 759 C; 982 G; 1118 T; 0 other;
ef155984 Length: 4223 19-NOV-2010 Type: N Check: 3705 ..
1 ggagccacct cttgtgtgct ccatcaaact aaggattctc tttcaaaaca
51 tcttggtctg aagggagtat ggaacaagtc agttattaca caggacctac
101 ttattctcgc aggagttttt gctggtggaa tctggatgat aatggcggga
151 gtgaaggatt catttgacca aactgtgcta catcaaggaa gagaaaagag
201 gcaaatgcaa aagctgaaat tcagaaaggc acgcgataat aaacttggat
251 tcgaagtgca tgctgatgat ggaactatcg aacacttctt tggtagcgca
301 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tggggtcgaa
351 gaatagaaaa tttataaaca tgtacggatt tgatcccact gaatattcct
401 ttgtccgatt tgttgaccca ttaactggag ctgtgataga tgattccccg
451 tacacagata ttcttcttgt tcaggagagg attggtgagg ctcgtttgaa
501 tgccatcaaa gaagatgaac tttcaagaga aaaagttgca caaaatccag
551 gaattcatgc atattatatc aatgaaatca caaatgctgc acttaaagtt
601 gatcttacac cgcacaatcc attgcttgca tgtgaaagac atagtactat
651 tgccggtcat cctgaatatg aaggagtttt gagacaaacc ggacccccaa
701 ttaagatgac acttaatgac gtgccagtga atcctgaaga ggcaagtttg
751 gttgggcacg aaagtaaatc attatttaga ggcttaaggg attataatcc
801 aatagctagc gtcatatgtc atctcgtgaa tgaggcagat ggaagaacaa
851 gtgactgttt cgggattgga tatggtggtc tcattgtcac caataggcat
901 ctgtttaaac gaaacaatgg gacgctgaca ataagatctc gtcacggaga
951 gtttgttatt aagaacacaa ctcaacttgg aatgaagccc tgtgctgata
1001 gagacatact aatcattagg atgcctaagg atataccccc gtttccacaa
1051 cgcctgaaat ttagggttcc aaaagaaaat gaaagaatct gcttggttgg
1101 atcaaatttt caggataaat caatcacgag cacaatttca gaaaccagcg
1151 taacgtgcca tgtgccaaac tcacattttt ggaagcactg gattgataca
1201 aaagatggac attgtggtct tcccttagta agcactactg atggtgcttt
1251 gttgggagtg catagtctat caaatttgac gaacactcag aacttctttg
1301 catcatttcc tgagaacttt gaagtggatt atttgaaaac tcctgaggca
1351 atggattgga taaagaaatg gagttataat ccagatgaaa tttgttgggg
1401 aacgctggaa ctgaaaacag gacaacccgt tgccccattc aaagtatcca
1451 aactaatcac ggacttagaa ggcatacaag tgtatgctca aacaaggtcg
1501 gaaagatggg ttcaagatag actatatggc aatcttaaag cagttggtca
1551 atgtcctgca caattggtta ctaagcacgt tgtaaaggga aaatgcatgc
1601 tatttgacct atatttgcag caagatcaat ctgaaaggga gtatttcaag
1651 cctcttatgg gagcatacgg gaaaagtagg ctcaacaaag aggcgtataa
1701 taaggatttg ttcaaatatg cgacacaaat tcaggcagga gatgtgcaag
1751 tggatacatt cgaattggcg gaaagatctg tcatttctat gctcacgtca
1801 aaaggatttg aaaagtgcaa ctacatcaca gatccagagg aaattcttaa
1851 agcactgaac atgaaggctg cagtcggtgc gatgtacagt ggaaagaaga
1901 aggattactt tgaaggaatg agtgattacg atgtggaaga ccatcttttt
1951 catagttgca agcgtttgtt catgggacac aaaggtcttt ggaatggatc
2001 cttgaaagct gagttgagac ctatggaaaa agtggaactt aacaaaacaa
2051 gaaccttcac agcggctcct cttgacacgc tgcttggtgg taaggtgtgt
2101 gtagacgatt tcaataacat gttttataac caccatttaa aatgtccatg
2151 gacagtagga ataaccaaat tttaccaagg atgggatagg cttctcacat
2201 ctctacctga aggatgggtt tattgtgacg ctgatggatc acaatttgat
2251 agttctctct ctccatattt gatcaattca gttcttaata taagaagaga
2301 atttatggaa gattgggatg ttggtgatca aatgcttcgg aatttataca
2351 cagaaatagt gtacacacca atactgacac cagacggaac catagtgaag
2401 aagttcaaag gtaacaacag tggacagcca tctactgtgg ttgataatac
2451 acttatggtt gtgttagcag ttcactacac attgctgaaa ctaggaatcc
2501 aagagagcga gtttgataaa tgctgtgtct ttttcgcaaa tggcgatgat
2551 ttattattgg caatgaggcc agatacagcc catttactgg ataagtttgg
2601 tgaatgtttt tctgaattag gactcaatta tgacttttca tcacgaacaa
2651 ataagaagga agatctatgg tttatgtcac actgtggcgt gaaacgtgat
2701 ggaatattta ttccgaagtt ggagcctgaa aggattgttt caattcttga
2751 atgggaccgt tcacacgagc caattcaccg actggaagca atatgtgccg
2801 cgatggtgga atcatggggt tatgatgaac ttcttcatca tattaggaaa
2851 ttttatgcat gggttttgga ccaagcccca tacaatgaac tagcacgaaa
2901 tgggaaagca ccatacatag ctgaaactgc actcaaagca ctctatactg
2951 gtgttcaacc taatgcctct gaattgagtg cgtatacgag agtgctcaaa
3001 gaaatgtatg atgacagtat gctccaagag aatgatttag aagtatatca
3051 tcaatctaat gagagaactg aatttaaaga tgcaggagcg gaccctccag
3101 cccctaagcc taagaacgtt cctccaccac ccacaataac tgaaatcact
3151 gatccagagg acccgaagca ggaagctttg aaagctgcac gagcaaaaca
3201 acccgcggtc attccagagt catatggacg agacacgagc aaagaaaggg
3251 agtcaatagt gggggcatca tcgaagggtg tgagggataa agatgtgaat
3301 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa
3351 taagaaaagg caaccaatgg tcaatggaag ggccattata aatttccagc
3401 acttgtcaac atatgaacca gagcaatttg aggttgcaaa cacccggtca
3451 actcaagaac agttccaagc atggtatgaa ggagttaaag gggattatgg
3501 tgttgacgac acagggatgg ggatcttatt gaatggacta atggtttggt
3551 gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg
3601 gatggtgatg aacaagtaac atatccaatt aaaccattac tggaccatgc
3651 agtgcctact tttaggcaga tcatgacgca cttcagtgac gttgctgaag
3701 cttacataga gatgcgaaac cgtacaaagg catacatgcc aaggtatggt
3751 ctacaacgta atttgactga tatgagtctt gcgcgatatg catttgattt
3801 ttacgagctg cattcaacta cacctgcacg tgctaaagaa gcacatttac
3851 agatgaaggc agccgcactc aagaatgcgc gaaatcggtt gtttggttta
3901 gacggaaacg tctctacgca agaagaagat acggagaggc acacgacaac
3951 tgatgttact agaaatatac ataacctctt aggaatgagg ggtgtgcaat
4001 aggacatcct ctgcactgta gcttatactt atgttatctt tagtatgcct
4051 ttaatttaaa ttcgtgtctt tcagtcccga aggagatggt tgaatgcata
4101 acatggtggg attatatctc ggttattgca tttgagaagt cgcctttcta
4151 ttacgtatca taagggactc ttaaaagtga ggaatacctc gtaagaaaag
4201 cctttttggt tcgtgatcga gcc