Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus isolate 61MBL polyprotein gene, partial cds.

ACC No: EF155991

Dated: 2010-11-19 | Length: 1814 | CRC: 437192585

                
ID   EF155991; SV 1; linear; genomic RNA; STD; VRL; 1814 BP.
XX
AC   EF155991;
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DT   05-OCT-2010 (Rel. 106, Created)
DT   19-NOV-2010 (Rel. 106, Last updated, Version 2)
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DE   Sweet potato feathery mottle virus isolate 61MBL polyprotein gene, partial
DE   cds.
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KW   .
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OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1814
RX   PUBMED; 20609081.
RA   Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.;
RT   "Molecular genetic analysis of virus isolates from wild and cultivated
RT   plants demonstrates that East Africa is a hotspot for the evolution and
RT   diversification of Sweet potato feathery mottle virus";
RL   Mol. Ecol. 19(15):3139-3156(2010).
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RN   [2]
RP   1-1814
RA   Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT   ;
RL   Submitted (30-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Applied Biology, University of Helsinki, P.O. Box 27
RL   (Latokartanonkaari 7), Helsinki FIN-00014, Finland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1814
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /host="Lepistemon owariensis"
FT                   /isolate="61MBL"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Mbale"
FT                   /isolation_source="leaf"
FT                   /db_xref="taxon:12844"
FT   CDS             <1. .1593
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:E1U284"
FT                   /protein_id="ABO92953.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANG
FT                   DDLLLAMRPDTAHLLDKFGECFSELGLNYDFSSRTNKKENLWFMSHCGVKRDGIFIPKL
FT                   EPERIVSILEWDRSHEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELAR
FT                   NGKAPYIAETALKALYTGVQPNASELSAYTRVLKEMYDDSMLQESDLEVYHQSNERTEF
FT                   KDAGANPPAPKPKDNPPPPIITEITDPEDPKQAALKAARAKQPAVVPESYGRDTSKERE
FT                   SIVGASSKSVRDKDVNVGTVGTFVVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQF
FT                   EVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDG
FT                   DEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLA
FT                   RYAFDFYELHSTTPARAKEAHLQMKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVT
FT                   RNIHNLLGMRGVQ"
FT   mat_peptide     <1. .645
FT                   /product="nuclear inclusion body protein"
FT                   /note="NIb"
FT   mat_peptide     646. .1590
FT                   /product="coat protein"
FT                   /note="CP"
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SQ   Sequence 1814 BP; 562 A; 338 C; 436 G; 478 T; 0 other;

ef155991 Length: 1814  19-NOV-2010  Type: N  Check: 4596  ..

       1  ggtaacaata gtgggcagcc atctactgtg gtcgataata cacttatggt
      51  tgtgttagca gttcactaca cattgctgaa actaggaatc caagaaagcg
     101  agtttgataa atgctgtgtc tttttcgcaa atggtgacga tttgttgttg
     151  gcaatgaggc cggatacagc ccatttactg gataagtttg gcgaatgttt
     201  ttctgaatta ggactcaatt atgacttttc atcacgaaca aataagaagg
     251  aaaatctgtg gtttatgtca cactgtggcg tgaaacgtga tggaattttt
     301  attccgaagt tggaacctga aaggattgtt tcgattcttg aatgggatcg
     351  ttcacacgag ccaattcatc gactggaagc aatatgtgcc gcgatggtgg
     401  aatcatgggg ttatgatgaa cttcttcatc atattaggaa attctatgca
     451  tgggttttgg accaagcccc atacaacgaa ctagcacgaa atgggaaagc
     501  accatacata gctgaaactg cactcaaagc gctctatact ggtgttcaac
     551  ctaatgcctc tgaattgagt gcgtatacga gagtgctcaa agaaatgtat
     601  gatgacagta tgctccaaga aagtgatttg gaagtatatc atcaatctaa
     651  tgagagaact gaatttaaag atgcaggagc gaaccctcca gcccctaagc
     701  ctaaggacaa tcctccacca cccataataa ctgaaatcac tgatccagag
     751  gacccgaagc aggcagcttt gaaagctgca cgagcaaagc aacccgcagt
     801  cgttccagag tcatatggac gagacacgag caaagaaagg gagtcaatag
     851  tgggggcatc atcaaagagt gttagggata aagatgtgaa tgttggtacc
     901  gttggtacat ttgttgtgcc acgtgtcaag atgaatgcaa ataagaaaag
     951  gcaaccaatg gtcaatggaa gggccattat aaattttcag cacttgtcaa
    1001  catacgaacc agagcagttt gaggttgcaa acacccggtc gactcaagaa
    1051  cagttccaag catggtatga aggagttaaa ggggattatg gtgttgacga
    1101  cacagggatg ggaatcttat tgaatggact aatggtttgg tgcattgaaa
    1151  atggcacatc cccaaatata aatggtgtgt ggacaatgat ggatggtgat
    1201  gagcaagtaa catatccaat taaaccatta ctggaccatg cagtgcctac
    1251  ttttaggcag attatgacgc acttcagtga cgttgctgaa gcttacatag
    1301  agatgcgaaa ccgtacaaag gcatacatgc caaggtatgg tctacaacgt
    1351  aatttgactg atatgagtct tgcgcgatat gcatttgatt tctacgagct
    1401  gcattcaact acacctgcac gtgctaaaga agcacattta cagatgaagg
    1451  cagccgcact taagaatgcg cgaaatcggt tgtttggttt ggacggaaac
    1501  gtctccacgc aagaagaaga tacggagagg cacacgacaa ctgatgttac
    1551  tagaaatata cataacctct taggaatgag gggtgtgcaa taggacatcc
    1601  tctgcactgt agcttatact tatgttatct ttagtatgcc tttaattcaa
    1651  attcgtgtct ttcagtcccg aaggagatgg ttgaatgcat aacatggtgg
    1701  gattatatct cggttattgc atttgagaag tcacctttct attacgtatc
    1751  ataagggact cttaaaagtg aggagtacct cgtaagaaaa gcctttttgg
    1801  ttcgtgatcg agcc