Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus isolate 37MBL polyprotein gene, partial cds.
ACC No: EF155993
Dated: 2010-11-19 | Length: 4223 | CRC: 897465043
ID EF155993; SV 1; linear; genomic RNA; STD; VRL; 4223 BP.
XX
AC EF155993;
XX
DT 05-OCT-2010 (Rel. 106, Created)
DT 19-NOV-2010 (Rel. 106, Last updated, Version 2)
XX
DE Sweet potato feathery mottle virus isolate 37MBL polyprotein gene, partial
DE cds.
XX
KW .
XX
OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-4223
RX PUBMED; 20609081.
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.;
RT "Molecular genetic analysis of virus isolates from wild and cultivated
RT plants demonstrates that East Africa is a hotspot for the evolution and
RT diversification of Sweet potato feathery mottle virus";
RL Mol. Ecol. 19(15):3139-3156(2010).
XX
RN [2]
RP 1-4223
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (30-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, P.O. Box 27
RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .4223
FT /organism="Sweet potato feathery mottle virus"
FT /host="Lepistemon owariensis"
FT /isolate="37MBL"
FT /mol_type="genomic RNA"
FT /country="Uganda:Mbale"
FT /isolation_source="leaf"
FT /db_xref="taxon:12844"
FT CDS <1. .4002
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="UniProtKB/TrEMBL:E1U286"
FT /protein_id="ABO92955.1"
FT /translation="GATSCVLHQTKDALSKHLRLKGVWNKSVITQDLFILAGVFAGGLW
FT MIMAGLKESFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK
FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDIFLVQEKIGE
FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE
FT YEGVLRQTGPPIKMTFNDVPVSPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG
FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIKSRHGEFVIKNTTQLGMKPCADRDILIIR
FT MPKDIPPFPQRIKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID
FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEAEYLRTPEAMDWIKKWS
FT YNPDEICWGTLELKTGQPATPFKVSKLITDLEGIQVYAQTRSDRWVQDRLYGNLKAVGQ
FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ
FT IQAGDVQVDTFELAERSVVSMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD
FT YFEGMSDHDVEDHLFHSCRRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL
FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL
FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST
FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS
FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA
FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA
FT SELSVYTRVLKEMYDDSMLQENDLEVYHQSNESNEFKDAGADPPTPKPKNVPPPPTITE
FT ITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIMGASSKSMRDKDVNVGTVGTF
FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY
FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM
FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ
FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT mat_peptide <1. .27
FT /product="cytoplasmic inclusion protein"
FT /note="CI"
FT mat_peptide 28. .186
FT /product="6K2 protein"
FT mat_peptide 187. .762
FT /product="VPg protein"
FT mat_peptide 763. .1491
FT /product="NIa-Pro protein"
FT mat_peptide 1492. .3054
FT /product="nuclear inclusion body protein"
FT /note="NIb"
FT mat_peptide 3055. .3999
FT /product="coat protein"
FT /note="CP"
FT 3'UTR 4003. .4223
XX
SQ Sequence 4223 BP; 1365 A; 785 C; 981 G; 1092 T; 0 other;
ef155993 Length: 4223 19-NOV-2010 Type: N Check: 7724 ..
1 ggagccacct cttgtgtgct tcatcaaaca aaagatgcac tctcaaagca
51 ccttcgtctg aaaggagtgt ggaataaatc agtcatcaca caggatttgt
101 tcattttagc aggggtattt gctggtggtt tgtggatgat aatggcgggg
151 ctaaaggaat cattcgatca aactgtgtta caccaaggaa aagaaaagcg
201 acaaatgcaa aagcttaagt ttaggaaagc acgagataat aaacttggat
251 tcgaagtgca tgctgatgat ggaactattg aacacttctt tggtagtgca
301 tacaccaaga aagggaaaca aaaaggaaag gtcactggaa tgggatcaaa
351 gaacagaaaa tttataaaca tgtacggatt tgatcccact gaatattcct
401 ttgtccgatt tgttgaccca ttaactggag ctgtgataga tgattcccca
451 tacacagata tttttcttgt tcaggagaaa attggtgagg ctcgtttgaa
501 tgccatcaaa gaagatgaac tttcaagaga gaaagttgca caaaatccag
551 gaattcatgc atactatatc aatgaaatca caaatgctgc actcaaagtt
601 gatcttacac cgcacaaccc actacttgca tgtgagagac atagcactat
651 tgctggtcat cctgaatatg aaggagtttt gagacaaacc ggacccccaa
701 ttaagatgac atttaatgac gtgccagtga gtcctgaaga ggcaagttta
751 gttgggcatg agagtaagtc attattcaga ggcctacggg attacaaccc
801 aatagcaagt gttatatgtc acctaatgaa tgaagcggat gggagaacaa
851 gcgattgttt tggaatcgga tacggtggtc tcattataac aaataggcat
901 cttttcaaaa ggaacaatgg tacattaaca attaaatctc gacatggaga
951 gtttgttatc aagaacacaa cccaacttgg gatgaaacct tgcgctgaca
1001 gagacatact catcattagg atgcctaagg atatacctcc gtttccacaa
1051 cgaatcaaat ttagggtccc aaaagagaac gaaagaattt gcttggttgg
1101 gtcaaatttt caagacaaat caattacaag cacgatctct gaaactagtg
1151 tcacatgtca cgtgccaaac tcacattttt ggaagcactg gattgacacg
1201 aaggatgggc attgtggcct ccccttagtg agtactactg atggtgctct
1251 gttgggagta cacagcttgt caaatttgac aaacacccaa aacttctttg
1301 cctcgtttcc tgagaatttt gaagcggagt acttgaggac tcctgaggca
1351 atggactgga taaagaaatg gagctataac ccagacgaga tttgttgggg
1401 aacattggaa ttgaagacag gacaacctgc caccccattc aaagtgtcca
1451 aactgatcac ggatctagaa ggaatacaag tgtatgccca gacaaggtca
1501 gacagatggg tccaggatag attgtatggc aatctcaaag cagttggtca
1551 atgccctgca cagttagtga ctaaacatgt tgtaaaaggt aaatgcatgc
1601 tattcgacct ctacttgcaa caagaccaat ctgaaaggga atacttcaaa
1651 cctctcatgg gagcatatgg gaaaagtagg cttaataagg aagcttacaa
1701 taaggatcta tttaagtacg caacacaaat tcaggcagga gatgtgcaag
1751 tggatacgtt cgaattggcg gaaagatctg tcgtttccat gctcacgtca
1801 aaaggatttg aaaagtgcaa ctacatcaca gatccagagg aaattctgaa
1851 agcactgaat atgaaggctg cagtcggtgc gatgtacagt ggaaagaaga
1901 aggattactt tgaaggaatg agcgaccacg atgtagaaga ccatctcttt
1951 cacagttgca ggcgtttgtt catgggacac aaaggtcttt ggaacggatc
2001 cttaaaagct gagttgagac ctatggaaaa agtggaactt aacaaaacaa
2051 gaaccttcac agcggctcct cttgacacgc tacttggtgg taaggtgtgt
2101 gtagacgatt tcaacaacat gttttacaac caccatttaa aatgtccatg
2151 gacggtagga ataaccaaat tctaccaagg atgggatagg cttctcacat
2201 ctctacctga gggatgggtt tattgtgacg ctgatggttc acaatttgat
2251 agttctctct ctccatattt gattaattca gttcttaata taagaaggga
2301 atttatggaa gattgggatg ttggtgatca aatgcttcgg aatttataca
2351 cagaaatagt gtatacacca atactgacac cagatggaac catagtgaag
2401 aagttcaaag gtaacaacag tggacagcca tccactgtgg ttgataatac
2451 acttatggtt gtgttagcag ttcactacac actgctgaaa ctaggaatcc
2501 aagaaagcga gtttgataaa tgctgtgtct ttttcgcaaa tggtgatgac
2551 ttattgttgg caatgaggcc agatacagcc catttactgg ataagtttgg
2601 tgaatgtttt tctgaattag gactcaatta tgacttttca tcacgaacaa
2651 ataagaaaga agatctatgg tttatgtcac actgtggcgt gaaacgtgat
2701 ggaatattta tcccgaagtt ggagcctgaa aggattgttt caattcttga
2751 atgggatcgt tcacacgagc caattcatcg actggaagca atatgtgccg
2801 cgatggtgga atcatggggt tatgatgaac ttcttcatca tattaggaaa
2851 ttctatgcat gggttctgga ccaagcccca tacaatgaac tagcacgaaa
2901 tgggaaagca ccatacatag ctgaaactgc actcaaagca ctctatactg
2951 gtgttcaacc taatgcttct gaattgagtg tgtatacgag agtgctcaaa
3001 gaaatgtatg atgacagtat gctccaagag aatgatttgg aagtgtatca
3051 tcaatctaat gagagcaatg aatttaaaga tgcaggggcg gaccctccaa
3101 cccctaagcc taagaacgtt cctccaccac ccacaataac tgaaattact
3151 gatccagagg acccaaagca ggcagctttg aaagctgcac gagcaaagca
3201 acccgcagtc attccagaat catatggacg agacacgagc aaagaaaggg
3251 agtcaataat gggggcatca tcaaagagta tgagggataa agatgtgaat
3301 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa
3351 caagaagagg caaccaatgg tcaatggaag ggccattata aatttccagc
3401 acttgtcaac gtatgaacca gagcagtttg aggttgcaaa cacccggtcg
3451 actcaagaac agttccaagc atggtatgaa ggagtaaaag gggattatgg
3501 tgttgacgac acaggaatgg ggatcttatt gaatggacta atggtttggt
3551 gtattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg
3601 gatggtgatg agcaagtgac atatccaatt aaaccattac tggaccatgc
3651 agtgcctact tttaggcaga ttatgacgca cttcagtgac gttgctgaag
3701 cttacataga gatgcgaaac cgtacaaagg cgtacatgcc aagatatggt
3751 ctacaacgta atttgactga tatgagtctt gcgcgatatg catttgattt
3801 ctacgagctg cattcaacta cacctgcacg tgctaaagaa gcacatttac
3851 agatgaaggc agccgcactt aagaatgcgc gaaatcggtt gtttggtttg
3901 gacggaaacg tctccacgca agaagaagat acggagaggc acacgacaac
3951 tgatgttact agaaatatac ataacctctt aggaatgagg ggtgtgcaat
4001 aggacatcct ctgcactgta gcttatactt atgttatctt tagtatgcct
4051 ttaatttaaa ttcgtgtctt tcagtcccga aggagatggt tgaatgcata
4101 acatggtggg attatatctc ggttattgca tttgagaagt cacctttcta
4151 ttacgtatca taagggactc ttaaaagtga ggagtacctc gtaagaaaag
4201 cctttttggt tcgtgatcga gcc