Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus isolate 43RUK polyprotein gene, partial cds.

ACC No: EF155995

Dated: 2010-11-19 | Length: 1814 | CRC: -1242877044

                
ID   EF155995; SV 1; linear; genomic RNA; STD; VRL; 1814 BP.
XX
AC   EF155995;
XX
DT   05-OCT-2010 (Rel. 106, Created)
DT   19-NOV-2010 (Rel. 106, Last updated, Version 2)
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DE   Sweet potato feathery mottle virus isolate 43RUK polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1814
RX   PUBMED; 20609081.
RA   Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.;
RT   "Molecular genetic analysis of virus isolates from wild and cultivated
RT   plants demonstrates that East Africa is a hotspot for the evolution and
RT   diversification of Sweet potato feathery mottle virus";
RL   Mol. Ecol. 19(15):3139-3156(2010).
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RN   [2]
RP   1-1814
RA   Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT   ;
RL   Submitted (30-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Applied Biology, University of Helsinki, P.O. Box 27
RL   (Latokartanonkaari 7), Helsinki FIN-00014, Finland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1814
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /host="Ipomoea tenuirostris"
FT                   /isolate="43RUK"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Rukungiri"
FT                   /isolation_source="leaf"
FT                   /db_xref="taxon:12844"
FT   CDS             <1. .1593
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:E1U288"
FT                   /protein_id="ABO92957.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANG
FT                   DDLLLAMRPDTAHLLDKFGECFSELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKL
FT                   EPERIVSILEWDRSHEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELAR
FT                   NGKAPYIAETALKALYTGVQPNASELSAYTRVLKEMYDDSMLQENELEVYHQSNESTEF
FT                   KDAGANPPAPKPKDVPPPPTITEITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERE
FT                   SIVGTSSKSVRDKDVNVGTVGTFVVPRVKMNANKKRQPMINGRAIINFQHLSTYEPEQF
FT                   EVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDG
FT                   DEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLA
FT                   RYAFDFYELHSTTPARAKEAHLQMKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVT
FT                   RNIHNLLGMRGVQ"
FT   mat_peptide     <1. .645
FT                   /product="nuclear inclusion body protein"
FT                   /note="NIb"
FT   mat_peptide     646. .1590
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1594. .1814
XX
SQ   Sequence 1814 BP; 572 A; 330 C; 426 G; 486 T; 0 other;

ef155995 Length: 1814  19-NOV-2010  Type: N  Check: 6862  ..

       1  ggtaataata gtggtcagcc atctactgtg gttgataata cacttatggt
      51  tgtgttagca gttcactaca cactgctgaa actaggaatc caagaaagcg
     101  agtttgataa atgttgtgtc tttttcgcaa atggtgatga tttattgttg
     151  gcaatgaggc cagatacagc ccatttattg gataagtttg gtgaatgttt
     201  ttctgaatta gggctcaatt atgacttttc atcacgaaca aataagaaag
     251  aagatctatg gtttatgtca cactgtggcg tgaaacgtga tggaatattt
     301  attccgaagc tggagcctga aaggattgtt tcaattcttg aatgggatcg
     351  ttcacacgag ccaattcatc gactggaagc aatatgtgcc gcgatggtgg
     401  aatcatgggg ttatgatgaa cttcttcatc atattaggaa attctatgca
     451  tgggttttgg accaagcccc atataacgaa ctagcacgaa atggaaaagc
     501  accatacata gctgaaactg cactcaaagc actctatact ggtgttcaac
     551  ctaatgcttc tgaattgagt gcgtatacga gagtgctcaa agaaatgtat
     601  gatgacagta tgcttcaaga gaatgaatta gaagtatatc atcaatctaa
     651  tgagagcact gaatttaaag atgcaggagc aaaccctcca gcccctaagc
     701  ctaaggacgt ccctccacca cccacaataa ctgaaatcac tgatccagag
     751  gacccgaagc aggcagcttt gaaagctgca cgagcaaagc aacccgcagt
     801  cattccagaa tcatatggac gagacacgag caaagaaagg gagtcaatag
     851  tggggacatc atcaaagagt gtgagggata aagatgtgaa tgttggcact
     901  gttggtacat ttgttgtgcc acgtgtcaaa atgaatgcaa acaagaaaag
     951  gcaaccaatg attaatggaa gggccattat aaatttccag cacttgtcaa
    1001  catatgaacc agagcagttt gaggttgcaa acacccgatc aactcaagaa
    1051  cagttccaag catggtatga aggagttaaa ggggattatg gtgttgacga
    1101  cacaggaatg gggatcttat tgaatggact aatggtttgg tgcattgaaa
    1151  atggcacatc cccaaatata aatggtgtgt ggacaatgat ggatggtgat
    1201  gagcaggtga catatccaat taaaccatta ctggaccatg cagtgcctac
    1251  ttttaggcag attatgacgc acttcagtga cgttgctgaa gcttacatag
    1301  aaatgcgaaa ccgtacaaag gcgtacatgc caagatatgg tctacaacgt
    1351  aatttgactg atatgagtct tgcgcgatat gcatttgatt tttacgagct
    1401  gcattcaact acacctgcac gtgctaaaga agcacatttg cagatgaagg
    1451  cagccgcact taagaatgcg cgaaatcggt tgtttggttt ggacggaaac
    1501  gtctccacgc aagaagaaga tacggagagg cacacgacaa ctgatgttac
    1551  tagaaatata cataacctct taggaatgag gggtgtgcaa taggacatct
    1601  tctgcactgt agtttatact tatgttatct ttagtatgcc tttaatttaa
    1651  attcgtgtct ttcagtcccg aaggagatgg ttgaatgcat aacatggtgg
    1701  gattatatct cggttattgc atttgagaag tcacctttct attacgtatc
    1751  ataagggact cttaaaagtg aggagtacct cgtaagaaaa gcctttttgg
    1801  ttcgtgatcg agcc