Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate Merida-5 coat protein (CP) gene, partial cds.

ACC No: EF189731

Dated: 2007-11-01 | Length: 924 | CRC: -1546387616

                
ID   EF189731; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
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AC   EF189731;
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DT   30-JUN-2007 (Rel. 92, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 2)
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DE   Papaya ringspot virus isolate Merida-5 coat protein (CP) gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-924
RX   PUBMED; 17668274.
RA   Chin M., Rojas Y., Moret J., Fermin G., Tennant P., Gonsalves D.;
RT   "Varying genetic diversity of Papaya ringspot virus isolates from two
RT   time-separated outbreaks in Jamaica and Venezuela";
RL   Arch. Virol. 152(11):2101-2106(2007).
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RN   [2]
RP   1-924
RA   Rojas Y., Condezo G., Rujano N., Vergara M., Labrador L., Fermin G.;
RT   ;
RL   Submitted (12-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL   Centro de Ingenieria Genetica, Universidad de Los Andes, Fac. de Ciencias,
RL   La Hechicera, Merida 5101, Venezuela
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /specific_host="Carica papaya"
FT                   /isolate="Merida-5"
FT                   /mol_type="genomic RNA"
FT                   /country="Venezuela"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   gene            <1. .924
FT                   /gene="CP"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT                   /protein_id="ABP38057.1"
FT                   /translation="SRSTDDHQLDCINNTHVFHQSKNEAVDAGLNEKLKEKEKQKEKEK
FT                   EKQKEKEKDDASDGNDVSTSTKTGERDRDVNVGTSGTFTVPRIKSFTDKMILPRIKGKT
FT                   VLNLNHLLQYNPKQIDISNTRATQSQFEKWYEGVRNDYGLNDNEMQVMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAMRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNRRMFGIDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 924 BP; 332 A; 156 C; 209 G; 227 T; 0 other;

ef189731 Length: 924  01-NOV-2007  Type: N  Check: 94  ..

       1  tcaaggagca ctgatgatca tcaacttgat tgtatcaaca atacacatgt
      51  ttttcatcag tccaaaaatg aagcagtaga tgctggttta aatgaaaagc
     101  tcaaagaaaa agaaaaacaa aaagaaaaag aaaaagaaaa acaaaaagag
     151  aaagaaaaag acgatgctag tgacggaaat gatgtgtcaa ctagcacaaa
     201  aactggagag agagatagag atgtcaatgt tgggaccagt ggaactttca
     251  ctgtcccgag aattaaatca tttactgata agatgattct accgagaatt
     301  aagggaaaaa ctgtccttaa tttaaatcat cttcttcagt ataatccgaa
     351  acaaattgac atttctaaca ctcgtgccac tcagtcacaa tttgagaaat
     401  ggtatgaggg agtgaggaat gattatggcc ttaatgataa tgaaatgcaa
     451  gtgatgctaa atggcttgat ggtttggtgt atcgagaatg gtacatctcc
     501  agacatatct ggtgtctggg ttatgatgga tggggaaacc caagttgatt
     551  atccaatcaa gcctttaatt gaacatgcta caccgtcatt tagacaaatt
     601  atggctcatt ttagtaacgc ggcagaagct tacattgcga tgagaaatgc
     651  tactgagagg tacatgccgc ggtatggaat caagagaaat ttgactgaca
     701  tcagcctcgc tagatacgct tttgacttct atgaggtgaa ttcgaaaaca
     751  cctgatagag ctcgtgaagc tcacatgcag atgaaggctg cagctttgcg
     801  aaacactaat cgcagaatgt ttggtatcga cggcagtgtt agcaacaagg
     851  aagaaaacac ggagagacac acagtggaag atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga