Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate Zulia-7 coat protein (CP) gene, partial cds.

ACC No: EF189732

Dated: 2007-11-01 | Length: 924 | CRC: -382167885

                
ID   EF189732; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
XX
AC   EF189732;
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DT   30-JUN-2007 (Rel. 92, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 2)
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DE   Papaya ringspot virus isolate Zulia-7 coat protein (CP) gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-924
RX   PUBMED; 17668274.
RA   Chin M., Rojas Y., Moret J., Fermin G., Tennant P., Gonsalves D.;
RT   "Varying genetic diversity of Papaya ringspot virus isolates from two
RT   time-separated outbreaks in Jamaica and Venezuela";
RL   Arch. Virol. 152(11):2101-2106(2007).
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RN   [2]
RP   1-924
RA   Rojas Y., Condezo G., Rujano N., Vergara M., Labrador L., Fermin G.;
RT   ;
RL   Submitted (12-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL   Centro de Ingenieria Genetica, Universidad de Los Andes, Fac. de Ciencias,
RL   La Hechicera, Merida 5101, Venezuela
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /specific_host="Carica papaya"
FT                   /isolate="Zulia-7"
FT                   /mol_type="genomic RNA"
FT                   /country="Venezuela"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   gene            <1. .924
FT                   /gene="CP"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT                   /protein_id="ABP38058.1"
FT                   /translation="SRSTDDRQLDCINNTHVFHQSKNEAVDAGLNEKLKEKEKQKEKEK
FT                   EKQKGKDKDDASDGNDVSTSTNTGERDRDVNVGTSGTFTVPRIKSFTDKMILPRIKGKN
FT                   VLNLNHLLQYIPKQIDISNTRATQSQFEKWYEGVKNDYGLNDNEMQVMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDGEIQVDFPIKPLIEHATPSFRQIMAHFSNAAEAYIAMRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNRRMFGIDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 924 BP; 316 A; 153 C; 220 G; 235 T; 0 other;

ef189732 Length: 924  01-NOV-2007  Type: N  Check: 6184  ..

       1  tcaaggagta ctgatgatcg tcaacttgat tgtatcaaca atacacatgt
      51  ttttcatcag tccaaaaatg aagcggtaga tgctggtttg aatgaaaagc
     101  tcaaagaaaa agaaaaacaa aaagaaaaag aaaaagaaaa acaaaaaggg
     151  aaagacaaag atgatgctag tgacggaaat gatgtgtcaa ctagcacaaa
     201  tactggagag agagatagag atgtcaatgt tgggaccagc ggaactttca
     251  ctgtcccgag gattaaatca tttactgata agatgatttt accgagaatt
     301  aagggaaaga atgtccttaa tttaaatcat cttcttcagt atattccgaa
     351  acaaatcgac atttctaata ctcgtgccac tcagtcgcaa tttgagaaat
     401  ggtatgaggg agtgaagaat gattatggcc ttaatgataa tgaaatgcaa
     451  gtgatgctga atggcttgat ggtttggtgt atcgagaatg gtacgtctcc
     501  agacatatct ggtgtctggg ttatgatgga tggggaaatc caagttgatt
     551  ttcccatcaa gcctttaatt gagcatgcta ctccgtcatt taggcaaatt
     601  atggctcatt ttagtaacgc ggcagaagca tacattgcga tgagaaatgc
     651  tactgagagg tacatgccgc gttatggaat caagagaaat ttgactgaca
     701  tcagcctcgc taggtacgct tttgacttct atgaggtgaa ttcgaaaaca
     751  cctgataggg ctcgtgaagc tcacatgcag atgaaggctg cagctttgcg
     801  aaacactaat cgcagaatgt ttggtatcga tggcagtgtt agcaacaagg
     851  aagaaaacac ggagagacac acagtggaag atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga