Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate Merida-8 coat protein (CP) gene, partial cds.

ACC No: EF189733

Dated: 2007-11-01 | Length: 924 | CRC: -1932309253

                
ID   EF189733; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
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AC   EF189733;
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DT   30-JUN-2007 (Rel. 92, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 2)
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DE   Papaya ringspot virus isolate Merida-8 coat protein (CP) gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-924
RX   PUBMED; 17668274.
RA   Chin M., Rojas Y., Moret J., Fermin G., Tennant P., Gonsalves D.;
RT   "Varying genetic diversity of Papaya ringspot virus isolates from two
RT   time-separated outbreaks in Jamaica and Venezuela";
RL   Arch. Virol. 152(11):2101-2106(2007).
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RN   [2]
RP   1-924
RA   Rojas Y., Condezo G., Rujano N., Vergara M., Labrador L., Fermin G.;
RT   ;
RL   Submitted (12-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL   Centro de Ingenieria Genetica, Universidad de Los Andes, Fac. de Ciencias,
RL   La Hechicera, Merida 5101, Venezuela
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /specific_host="Carica papaya"
FT                   /isolate="Merida-8"
FT                   /mol_type="genomic RNA"
FT                   /country="Venezuela"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   gene            <1. .924
FT                   /gene="CP"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT                   /protein_id="ABP38059.1"
FT                   /translation="SRSTDDYQLDCISSTHVFHQSKNEAVDAGLNEKLKEKDKQKEKEK
FT                   EKQKEKEKDDASEGNDVSTSANTGERDRDVNVGTSGTFTVPRIKLFTDKMILPRIKGKN
FT                   VLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRNDYGLNDNEMQVMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAMRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTSRRMFGMDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 924 BP; 321 A; 144 C; 219 G; 240 T; 0 other;

ef189733 Length: 924  01-NOV-2007  Type: N  Check: 7372  ..

       1  tcaaggagca ctgatgatta tcaacttgat tgtatcagca gtacacatgt
      51  ttttcatcag tccaaaaatg aagctgtaga tgctggtttg aatgaaaagc
     101  tcaaagaaaa agataagcaa aaagaaaaag aaaaagaaaa acaaaaagag
     151  aaagaaaaag acgatgctag tgagggaaat gatgtgtcaa ctagcgcaaa
     201  tactggagag agagatagag atgtcaatgt tgggactagt gggactttca
     251  ctgttccgag aataaaatta tttactgata agatgatttt accgagaatt
     301  aagggaaaaa atgtccttaa tttaaatcat cttcttcagt ataatccgca
     351  acaaattgac atttctaata ctcgtgccac tcagtcacaa tttgagaagt
     401  ggtatgaggg agtgaggaat gattatggcc ttaatgataa tgaaatgcaa
     451  gtaatgctaa atggcttgat ggtttggtgt attgagaatg gtacatctcc
     501  agacatatct ggtgtttggg ttatgatgga tggggaaacc caagttgatt
     551  atccaattaa gcctttaatt gagcatgcta caccgtcatt tagacaaatt
     601  atggctcatt ttagtaacgc ggcagaagct tacattgcga tgagaaatgc
     651  tactgagagg tacatgccgc gttatggaat caagagaaat ttgactgaca
     701  tcagcctcgc tagatacgct tttgatttct atgaggtgaa ttcgaaaaca
     751  cctgataggg ctcgtgaagc tcacatgcag atgaaggctg cagctttgcg
     801  aaacactagt cgcagaatgt ttggtatgga cggcagtgtt agcaacaagg
     851  aagaaaacac ggagagacac acagtggaag atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga