Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate Trujillo-1 coat protein (CP) gene, partial cds.

ACC No: EF189734

Dated: 2007-11-01 | Length: 924 | CRC: -1617583396

                
ID   EF189734; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
XX
AC   EF189734;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 2)
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DE   Papaya ringspot virus isolate Trujillo-1 coat protein (CP) gene, partial
DE   cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-924
RX   PUBMED; 17668274.
RA   Chin M., Rojas Y., Moret J., Fermin G., Tennant P., Gonsalves D.;
RT   "Varying genetic diversity of Papaya ringspot virus isolates from two
RT   time-separated outbreaks in Jamaica and Venezuela";
RL   Arch. Virol. 152(11):2101-2106(2007).
XX
RN   [2]
RP   1-924
RA   Rojas Y., Condezo G., Rujano N., Vergara M., Labrador L., Fermin G.;
RT   ;
RL   Submitted (12-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL   Centro de Ingenieria Genetica, Universidad de Los Andes, Fac. de Ciencias,
RL   La Hechicera, Merida 5101, Venezuela
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /specific_host="Carica papaya"
FT                   /isolate="Trujillo-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Venezuela"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   gene            <1. .924
FT                   /gene="CP"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT                   /protein_id="ABP38060.1"
FT                   /translation="SRSTDDYQLDCISSAHVFHQSKNEAVDAGLNEKLKEKDKQKEKEK
FT                   EKQKEKEKDDASEGNDVSTSAKTRERDRDVNVGTSGTFTVPRIKSFTDKMTLPRIKGKN
FT                   VLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRNDYGLNDNEMQVMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNASRRMFGMDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 924 BP; 322 A; 147 C; 223 G; 232 T; 0 other;

ef189734 Length: 924  01-NOV-2007  Type: N  Check: 4817  ..

       1  tcaaggagca ctgatgatta tcaacttgat tgtatcagca gtgcacatgt
      51  ttttcatcag tccaaaaatg aagctgtgga tgctggtttg aatgaaaagc
     101  tcaaagaaaa agataagcaa aaagaaaagg aaaaagaaaa acaaaaagag
     151  aaagaaaaag atgatgctag tgagggaaat gatgtgtcaa ctagcgcaaa
     201  aactagggag agagatagag atgtcaatgt tgggaccagt gggactttca
     251  ctgttccgag aataaaatca tttactgata agatgactct accgagaatt
     301  aagggaaaaa atgtccttaa tttaaatcat cttcttcagt ataatccgca
     351  acaaattgac atttctaata ctcgtgccac tcaatcacaa tttgagaagt
     401  ggtatgaggg agtgaggaat gattatggcc ttaatgataa tgaaatgcaa
     451  gtaatgctaa atggcttgat ggtttggtgt attgaaaatg gtacatctcc
     501  agacatatct ggtgtctggg ttatgatgga tggggaaacc caagttgatt
     551  atccaattaa gcctttgatt gagcatgcta caccgtcgtt tagacaaatt
     601  atggctcatt ttagtaacgc ggcagaagca tacattgcaa agagaaatgc
     651  tactgagagg tatatgccgc ggtacggaat caagagaaat ttgactgaca
     701  ttagcctcgc tagatacgct tttgatttct atgaggtgaa ttcgaaaaca
     751  cctgataggg ctcgcgaagc tcacatgcag atgaaagctg cagcgctgcg
     801  aaatgctagt cgcagaatgt ttggtatgga cggcagtgtt agtaacaagg
     851  aagaaaacac ggagagacac acagtggaag atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga