Sequence of DPV Artichoke yellow ringspot virus
Tomato white ringspot virus isolate T818 segment RNA1 polyprotein gene, partial cds.
ACC No: EF205130
Dated: 2007-01-16 | Length: 6657 | CRC: -576874485
ID EF205130; SV 1; linear; genomic RNA; STD; VRL; 6657 BP.
XX
AC EF205130;
XX
DT 16-JAN-2007 (Rel. 90, Created)
DT 16-JAN-2007 (Rel. 90, Last updated, Version 1)
XX
DE Tomato white ringspot virus isolate T818 segment RNA1 polyprotein gene,
DE partial cds.
XX
KW .
XX
OS Tomato white ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; unclassified Nepovirus.
XX
RN [1]
RP 1-6657
RA Ciuffo M., Margaria P., Lenzi R., Turina M.;
RT "Characterization of a new Nepovirus species isolated from tomato in
RT Italy";
RL Unpublished.
XX
RN [2]
RP 1-6657
RA Ciuffo M., Margaria P., Turina M.;
RT ;
RL Submitted (04-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL IVV, CNR, Strada delle Cacce 73, Torino, TO 10135, Italy
XX
FH Key Location/Qualifiers
FH
FT source 1. .6657
FT /organism="Tomato white ringspot virus"
FT /segment="RNA1"
FT /specific_host="Solanum lycopersicum"
FT /isolate="T818"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /db_xref="taxon:419587"
FT CDS <1. .5752
FT /codon_start=2
FT /product="polyprotein"
FT /note="ORF-1"
FT /protein_id="ABM65095.1"
FT /translation="LPPKVVTAAAPVKAEFNFPAEHFLPGELRYNSKPFPKDEAVSIPA
FT PVADAPIWERTHYFGLEAATPAGIAYKACMDAAHRIPLPERVRDFLITVAPCSLKWGKY
FT ASLLLRLYEHIPFGSYFEATKNVLTYTFDYEGVMVTLQEEVDCLDEFARTSIGAQGMMS
FT WINESASSLGHKFAKGIINAVTESADKMISKMQELARDAFTKIKQAFMELVSPHLARLQ
FT HISAEIEKYWVCVCRWATKMAESMSVQLQAFRDSMWWASAMLLSAGIVAIIEKILVKME
FT IITYPGVLVGCFLSSILAYMGYTALDDSGAIKMLMRTIKQSIISLYVQKETSPAEVRAM
FT VHGDADMIAHSVGEVPLRFLNAIGSGLIAAPLGTLQYAGKYGAALDQIRRGKDAMKEFT
FT GWTIECIGDAWDMYSGRRDTFFHEIARLTKVDIVKWIRDSQNIILQSQTTANTDPLLLE
FT MCTRALSKGWKLQQSLAKGKRTTNVDYGFIVGKYVTELQSIRAKCAMAGKMEGRRKEPF
FT WVYIYGESHCGKSLLMEPIIDALTDELGLPAGDTYAKNGRDNFWPGYTRQAVVTVDDLS
FT ATIAQPSLESEFMQLVGSKPYALNMAAVEEKGMLFSSRVIVTSSNFFDAPTKAEIQDRV
FT AYQNRRNVVVRCRRKPDSEFDPTNPHASCEAVFVDRKTEQQIGEWRNCEALIDEIKIKA
FT AAHDEKEEKLQAHYLGSHRRVHPIHNDIQDFLRAGIVMTKHLADTNYDTYRENWLDANL
FT AVDGKLYKVSLKNVCDELLELPPDGFEEACLARIPTLSTAMADEGVSEFVQTVIEGMIE
FT GPSFVESVDKMSAETPADHREFFSRLPLGERVYFRLLQKRFEQLKADKDFNFQIDMKMR
FT VLKSLKSSYDKVIENGGRIFLVCCAFIMIYFAYSTFFSIFNAFVGGSSAGMAGALITQL
FT DAHSVYSSGASVQSYRSRNLPTTYRQRMMAHSQDDSKKLADEDAKFKTDLLVRLTIPGG
FT RVICAVRFYGRSLLMTKHQAMAMRKGDRVMCNYTARGVQSGKIEFLYDPSRLTEFPDTE
FT LVQYADNVLSPLPNPAHNAFVFDHAKLKGTLQLFGAVIKLRRHCGDHTIGLENVDGDVP
FT TLHKWDAIGNVTTTRQTISTFVDGAPYYNDIPKYLHSNSPTTVEDCGAIMTALVDGEYR
FT VVGIHVAGGVTPTGQYTSMACLIPYVPHFECHSRMPALEERVGIDTLGCTKIGFVSNPV
FT ERPYYATKTQFVEVPEMVKIPYHDVKIPSILAKGDARLRGTEHEAYDPLKNGMSKYEEP
FT MSLVDEKLLREVAQEIVETWHDCEDGTFGDADDDVVINGIDGEDFFDALVMSTSEGYPY
FT IKERNIGEKGKARYFEPTGDGCRKQLIQGTMVAQDIEYLKETVHEIVPEIICVETPKDE
FT RLPARKVTGKPKTRLFSVLPLSYNFMLRKKFLYFVAFLQKNRGRLPCQVGINAYSREWQ
FT TLYNRLAERSENALNCDYSSFDGLMTGQMLSCIGDMINTMYGDSQKSKNGRKNLLMAIC
FT NRKSLCGADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGVPRNHFNEYVTLL
FT VYGDDNLIAVDPSILEVFNGDVIKKTMAKWRVTITDGSDKLSPTLTEKPLLSLDFLKRG
FT FKLADNGQVYAPLDKTAIYSSLHWVAGRGQDVMSALKDNARSALIEMWAHQDKAEFVEL
FT RSFYVSKIPSWSDLPTWDQARCFHEAQQHGAMPYRPQASMELLVDMHTDKKMMANHGEQ
FT DHLIYVQPRIAVSGPKWIIESCDKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPSQD
FT WVRRFRRIRHVQIRVIYDAYAAGKTIIFKDVAPYIAGWTAAISFACAQQYSYRDMLNRY
FT NNVCTPNSSGIEQYFAKDMAMKCKLPFHPPGEKCTCDVLSSR"
XX
SQ Sequence 6657 BP; 1828 A; 1198 C; 1655 G; 1976 T; 0 other;
ef205130 Length: 6657 16-JAN-2007 Type: N Check: 5815 ..
1 attaccacct aaggtggtta ccgctgcagc cccggttaag gctgaattca
51 acttccccgc agaacatttt ctgcctggtg agttgagata caacagcaag
101 ccctttccaa aggatgaggc tgtttctatt ccagcaccag ttgctgatgc
151 tcccatctgg gaaagaaccc attattttgg gttggaagct gccacaccag
201 ctggaattgc ctataaggca tgcatggatg cggcacacag aatccctcta
251 cctgagaggg ttcgtgattt cctaatcacg gttgcccctt gttctttgaa
301 gtggggtaag tatgcatctc ttttgttgcg tctttatgaa catattccct
351 ttgggagtta ttttgaagca acaaagaatg tattaactta cacctttgat
401 tatgaagggg ttatggttac actccaagag gaagtggatt gtctggatga
451 atttgctaga acttccattg gagcacaggg aatgatgtcg tggataaatg
501 agtctgcttc atcacttgga cataagtttg ctaagggtat tattaatgcc
551 gtgacagagt ctgcagataa gatgatatct aaaatgcaag aactggctcg
601 cgatgcattt acgaaaatca agcaagcttt catggaattg gtttcgcctc
651 acttggcgcg tctacaacac atcagtgctg aaattgaaaa atactgggtg
701 tgcgtttgta gatgggccac aaagatggct gaatcaatgt cggttcaact
751 ccaagcattt agagattcga tgtggtgggc tagtgctatg ctgttatcag
801 ctggtattgt ggccatcatt gagaaaattt tagtgaagat ggagattatc
851 acttatccag gagtccttgt ggggtgtttt ctgtcgagta tattggctta
901 tatgggctat actgctctag acgatagtgg tgctattaag atgttaatga
951 gaacaatcaa acagagcatc atctcccttt atgtccaaaa agaaacctcc
1001 ccagctgaag ttcgggccat ggttcatggt gatgcagata tgatagctca
1051 ctcagttggt gaagtgccat tgcgtttctt aaatgcaatt ggcagtggtt
1101 tgattgctgc tcccctaggc acgttgcaat atgctgggaa atacggtgcc
1151 gcgcttgatc aaattaggcg tggtaaggat gctatgaaag agttcacggg
1201 atggactatt gaatgcatag gagatgcatg ggatatgtat agtggtagaa
1251 gagacacgtt cttccatgag attgctcgat tgacgaaagt cgatatagtg
1301 aagtggattc gtgattcaca gaacataatc ttgcagtctc aaacaacagc
1351 caatacagat cctttgcttc tcgaaatgtg cacccgggct ctttcaaagg
1401 ggtggaagtt gcaacaatcc ctcgccaagg gcaagcgtac aactaatgtg
1451 gattacggat tcatagttgg gaagtacgtt actgagttac agagcatacg
1501 tgctaaatgt gctatggcag ggaagatgga aggaaggcgc aaggaaccat
1551 tttgggttta catttatggt gagtcccact gtgggaaatc attgttaatg
1601 gagccgatta tagatgcgct aactgatgag ctaggattgc cagctggtga
1651 tacctatgca aagaatggcc gtgacaattt ttggccaggt tacacaagac
1701 aagccgttgt gacggttgat gatctatcag ctacaatagc acaaccaagt
1751 cttgaatcag agttcatgca actggtgggc tcaaagcctt atgcacttaa
1801 tatggctgct gttgaggaaa aaggaatgtt gttttcatca cgtgtgatag
1851 tgacatcttc caatttcttt gatgcaccaa ccaaggccga gattcaagac
1901 agggttgcgt accaaaaccg tcgcaatgtg gtggttaggt gtcgtaggaa
1951 gccagacagt gaatttgacc caaccaaccc acacgcttct tgcgaggctg
2001 tttttgtgga ccggaagaca gagcagcaaa ttggtgaatg gcgcaattgt
2051 gaggcgctca tcgatgaaat taagattaag gcagctgctc atgatgagaa
2101 agaggaaaag cttcaggctc actatttggg atcgcaccgc agagttcatc
2151 caatacacaa tgatattcaa gatttcttgc gagctggtat tgtgatgaca
2201 aagcatttag cagatacaaa ttacgataca tatcgtgaaa attggctaga
2251 tgcaaatctt gcggtggatg gtaaactcta caaagtgagc ttgaagaatg
2301 tttgtgatga gttattggaa ctacctccgg atggattcga ggaagcttgt
2351 ttggcacgta ttccaacgct gtcaacagct atggctgatg agggagtttc
2401 tgaatttgta cagactgtta ttgagggtat gatagaaggt ccctcttttg
2451 tagaatctgt agataagatg tctgccgaaa caccagcgga tcacagggag
2501 ttcttctcgc gcctacctct tggtgagcgt gtgtacttcc gtctcttgca
2551 aaagagattt gagcaattga aagctgataa agatttcaat tttcaaattg
2601 atatgaagat gcgtgttttg aaatcactaa agtcatctta tgataaggtg
2651 attgaaaatg gtggacgaat tttcttagtt tgttgtgctt ttattatgat
2701 ttattttgca tatagcactt tcttttctat ttttaatgct tttgtgggtg
2751 gctccagtgc tggtatggcc ggagccctta taactcagct tgatgcacat
2801 tctgtttata gttctggtgc ttcggttcag agttatcgat cacgcaattt
2851 gccaacaacg tacaggcagc gaatgatggc gcattcccaa gatgattcca
2901 agaaattggc agatgaggat gcgaaattta agactgattt gttggtgcgt
2951 ttaactattc ctggtggtcg tgtcatttgt gctgtgcgct tttatgggcg
3001 ttcattactc atgacgaaac atcaggctat ggcaatgcgc aagggtgatc
3051 gtgtcatgtg taattatact gctaggggtg tacagagtgg gaagatcgaa
3101 tttttatatg atccttcccg tctcactgag tttcctgata ctgagcttgt
3151 acaatatgct gataatgtgc tcagtccttt acccaatcca gctcacaatg
3201 cctttgtttt tgatcatgct aaacttaagg gaacgctcca actttttgga
3251 gctgttatta aattgagaag gcattgtggt gatcatacga ttggcttgga
3301 gaatgtggat ggggatgtgc caacattgca caagtgggat gctattggta
3351 atgttactac aactaggcaa actatttcta cttttgtaga tggggcgcct
3401 tattataatg acattccaaa gtatctccac tctaactccc caaccacagt
3451 tgaagactgt ggagccataa tgacagccct ggttgatggt gaatacaggg
3501 ttgtgggcat ccacgttgca ggtggtgtga ctccaacagg gcaatatacc
3551 tcaatggcat gtttgatccc gtacgtacca cattttgagt gccattcacg
3601 aatgcctgca ttggaagaaa gagttggtat tgatacactt gggtgtacga
3651 agattggttt tgtgtccaat cccgttgaga gaccttatta tgcgaccaaa
3701 acacagttcg ttgaagttcc agaaatggtt aaaataccat accatgacgt
3751 taagatacct agtattttgg cgaaagggga tgcccgtctg aggggtacgg
3801 aacacgaggc atatgatcca ttgaaaaatg gtatgtccaa gtatgaagag
3851 ccaatgagtt tagttgatga gaaacttctg cgtgaagttg cccaagaaat
3901 cgtcgaaact tggcacgatt gcgaagatgg tacctttggt gatgccgatg
3951 atgatgttgt tattaatggt attgatggtg aggatttttt cgatgcgttg
4001 gttatgtcaa cgtccgaagg atatccttac attaaggaac gcaacatcgg
4051 agagaaaggc aaggctagat actttgagcc aactggagat gggtgtagaa
4101 aacaattaat acagggaaca atggttgcgc aggatattga atatctgaag
4151 gaaactgtgc atgaaattgt tcctgaaatt atttgtgttg aaacacctaa
4201 agatgagcgc ttgccggctc gtaaggttac tggtaaaccc aaaaccagat
4251 tgttctctgt tctacccctg agttacaatt tcatgttgcg caagaagttt
4301 ttatactttg tagcgtttct tcaaaagaat cggggtaggt tgccatgtca
4351 ggtggggata aatgcatatt cccgtgagtg gcaaacacta tacaatcgtt
4401 tggcagaaag aagcgagaac gctttgaact gtgattattc atcttttgat
4451 ggtttaatga cgggacaaat gttatcttgt attggagata tgattaatac
4501 gatgtatggt gattcccaaa aatccaaaaa tggtcggaaa aatcttttga
4551 tggccatatg caatcgcaag tcactttgtg gagctgatgc ttatgaggtg
4601 agagctggga taccttcagg ctgtgcttta acggtgttgt tgaactccat
4651 ttttaatgaa attttggtta gaatggtgta caaaacagtt gtgcctgggg
4701 ttccgcgtaa tcatttcaat gagtatgtca ctctattggt ttatggggat
4751 gataatttga tcgctgttga cccttctatc ttagaagtgt ttaatggtga
4801 tgtgataaag aaaaccatgg ccaaatggag ggtcactatt actgatggta
4851 gtgacaaatt atcgccaact cttactgaaa agcctctctt atctcttgat
4901 tttttgaaga gaggttttaa gttggcagat aatggacagg tgtatgctcc
4951 attggataaa acggcaattt actcctcatt gcactgggta gcgggtcgcg
5001 gtcaggatgt gatgtctgca ttaaaagata atgcacgtag tgcattgatt
5051 gaaatgtggg cacaccaaga taaggcagag ttcgtggaat tgcgctcatt
5101 ctatgtgagt aaaataccat cctggtctga tctcccaact tgggatcagg
5151 ctaggtgttt tcatgaagcg caacaacatg gagctatgcc ctatagaccg
5201 caggcatcaa tggaattgct ggttgacatg cataccgaca agaaaatgat
5251 ggcaaaccat ggtgaacagg atcatttgat atatgttcaa ccacgtattg
5301 ctgtttcagg acccaaatgg attatagaga gttgtgataa acagtttgtt
5351 gtctcaactc taccattgtc gcgtgcagag aaattttcag gaattcacat
5401 acctgtggaa tgtggtgatg gtttagggcg aatgccgtca caagattggg
5451 tgaggagatt tagacgtatc cgtcatgtgc aaattcgtgt tatttatgat
5501 gcatatgctg cgggtaagac tataatcttc aaagatgttg caccatacat
5551 agctggttgg actgctgcta tctcttttgc ctgtgctcaa cagtacagtt
5601 atagggatat gttgaatagg tataataatg tttgtacccc aaattcatcg
5651 ggtattgagc aatattttgc caaagatatg gctatgaagt gcaagttacc
5701 attccacccg cctggtgaaa agtgtacttg tgatgttctt tcatcccgtt
5751 gagagtaacg gggtctggtt gtcaacaagc cagtctgcta aatttgttga
5801 gaacctctga tcttaattga ttggagttat gctttatttt gtgttttgtt
5851 ttacacaaca tcaaaactca cacacttgtg tgataccact ttggttccgt
5901 gaaatcggta attgatggtt gtagagtctc ccatttggga tagaggacta
5951 tggttcccct cgataaaaac gaactacgta ttgagtaata ggcttgctcc
6001 agggtggtat gccgtcccct ggctcaatat gaagatttgg tgctttttgt
6051 cagatatgag cacccccgct tcacacgggg ttaagtcagt gtagtaaagg
6101 tgaaatattc cctggggcac tggttaacgt gaacgtttgg cgcgaaaagt
6151 ctaaaggtat gtgtacaaca ccttctgtac tcaagatcga agtttggcaa
6201 ctgagattgg atgggggccc gagatgaatg cggggaggta ataaacctca
6251 ggaaggcaca catgctgatt tccaaattta tgtaaatttg gcgttggaag
6301 tgaaggttcg acgatataga actttcaaga gctaggctga tgtcaatttg
6351 acacaaaccc aatagatcat ggaccctgga attgataccc gggagtaaat
6401 ccacaccaga tggagtgagt tttaatgatc ccctcacacg tggtgggaga
6451 atctattggc atttgtgggg ttggcaaaac cctagtaagg acgttgtttc
6501 tgacaggttt gttggtccta ttgagttttc taaacctgtt ttatcgtatg
6551 ataagctcct ctgactttca ctagttggag ttctgtgagc attgggctga
6601 tggacggact ttaattagtt cttactgaag cttttagtgc aaaaaaaaaa
6651 aaaaaaa