Sequence of DPV Chilli veinal mottle virus

Chilli veinal mottle virus isolate AB polyprotein gene, partial cds.

ACC No: EF213675

Dated: 2007-11-01 | Length: 1793 | CRC: 941289561

                
ID   EF213675; SV 1; linear; genomic RNA; STD; VRL; 1793 BP.
XX
AC   EF213675;
XX
DT   01-NOV-2007 (Rel. 93, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 1)
XX
DE   Chilli veinal mottle virus isolate AB polyprotein gene, partial cds.
XX
KW   .
XX
OS   Chilli veinal mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1793
RA   Reddy C.N.L., Devaraju, Madhavi Reddy K., Krishnareddy M.,
RA   Venkataravanappa V., Jalali S., Usha Rani T.R., Raman L., Jalali S.,
RA   Ajith Prasad H.N.;
RT   "Molecular genetic diversity of Chilli veinal mottle virus infecting chilli
RT   pepper in India";
RL   Unpublished.
XX
RN   [2]
RP   1-1793
RA   Reddy C.N.L., Devaraju, Madhavi Reddy K., Krishnareddy M.;
RT   ;
RL   Submitted (28-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1793
FT                   /organism="Chilli veinal mottle virus"
FT                   /specific_host="Capsicum annuum"
FT                   /lab_host="Datura metel"
FT                   /isolate="AB"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Aurangabad; Maharashtra"
FT                   /isolation_source="leaf"
FT                   /virion
FT                   /db_xref="taxon:52280"
FT   CDS             <1. .1494
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ABQ23257.1"
FT                   /translation="GQPSTVVDNTLMVLVAMRYSLRRLGINYKDQNERCVFFANGDDLI
FT                   VSVPPRDEWILDSLQEPFSELGLSYDFNERTRERSELWFMSHRGILIENQYVPKLEPER
FT                   IVSILEWDRAEQPEHRLEAICASMIEAWGYKELLHEIRLFYKWVIEQAPYSQLVSEGKA
FT                   PYISETALRCLYMSDHGESDISPYLRALIEGAKKEELDDEGGEVAHQAGESVDAGRVKG
FT                   EDSSSKPADKQATEKKNKASEQAQPQSRQSEMEVPQVRDRDVNVGTSGTFTIPRLKGIS
FT                   SKLTIPKIKTKAVVNLEHLLDYAPEQIHLSNTRALQSQFASWYEGVKNDYDVTDEQMQI
FT                   ILNGLMVWCIENGTSPNINGYWVMMDGDEQVEYPIKPLIDHAKPSFRQIMAHFSNLAEA
FT                   YIEKRNSEKPYMPRYGLQRNLTDMSLARYAFDFYEMTSKTPVRAREAHIQMKAAALRGV
FT                   SNRMFGLDGRVGTQEEDTERHTAEDVNRNMHNLLGVRGL"
FT   mat_peptide     <1. .630
FT                   /product="nuclear inclusion b protein"
FT                   /note="Nib"
FT   mat_peptide     631. .1491
FT                   /product="coat protein"
FT   3'UTR           1495. .1793
XX
SQ   Sequence 1793 BP; 568 A; 331 C; 428 G; 466 T; 0 other;

ef213675 Length: 1793  01-NOV-2007  Type: N  Check: 9985  ..

       1  ggacaaccat cgacagtcgt ggacaacaca ctcatggtgc tagtggcaat
      51  gagatactca ttgcgccggc tgggcattaa ctacaaagat cagaacgaaa
     101  gatgtgtttt ctttgccaat ggtgatgatc tgatcgtttc agtgccacct
     151  agagatgagt ggatactgga ctccttgcaa gaaccatttt cagaattggg
     201  cttgtcatat gatttcaatg agcgaacaag agaaagatcg gagctttggt
     251  ttatgtccca tcgagggata ctaattgaaa accagtatgt tccaaagctt
     301  gaacctgagc gcatagtctc aattcttgaa tgggatagag ctgagcaacc
     351  ggaacatcga cttgaagcca tttgtgcatc tatgattgaa gcatggggtt
     401  acaaagagtt attacatgag ataaggctct tctataaatg ggtgattgaa
     451  caagcaccat attcgcaact tgtctctgag gggaaggcac catacatttc
     501  agaaacagca ttgaggtgcc tctacatgag cgatcatgga gagagtgaca
     551  ttagcccata tctaagagcg cttattgagg gagccaagaa ggaagaatta
     601  gatgatgagg gcggagaagt tgcccatcag gcgggagaga gtgttgatgc
     651  tggaagggtg aaaggcgaag attcatcaag caaaccagct gataaacaag
     701  ccacagaaaa gaagaacaag gcgagtgaac aagctcagcc acagtctcgt
     751  cagagtgaaa tggaagtacc ccaagtccga gatagagatg ttaacgttgg
     801  gacctcagga acattcacaa taccgcgtct caagggtatt tcttcaaagt
     851  taacaatacc aaagatcaag acaaaggctg ttgttaacct tgaacacctt
     901  cttgattatg cccctgaaca aatacatttg agtaacacaa gggcattaca
     951  atcacaattt gcatcttggt atgaaggtgt taagaatgac tacgatgtaa
    1001  cagatgaaca gatgcaaata attttgaatg gattgatggt ttggtgtatt
    1051  gagaatggaa cgtcaccaaa cattaatggt tattgggtta tgatggatgg
    1101  agatgaacaa gttgaatacc caataaaacc attgatcgat catgccaaac
    1151  catcatttag acaaatcatg gcgcatttta gcaatcttgc tgaagcgtac
    1201  attgagaagc gcaactctga gaagccatat atgccaagat atgggcttca
    1251  aagaaacctt accgatatgt cattagcgcg atatgctttc gatttttatg
    1301  aaatgacatc gaaaactccc gtccgagctc gtgaggcaca catccaaatg
    1351  aaagcagccg cattacgtgg cgtcagcaac aggatgttcg gactggacgg
    1401  tagggtagga acacaggaag aggacaccga acgtcacaca gcagaggatg
    1451  tgaatagaaa catgcataac ctgcttggcg ttcgagggtt gtgaacttca
    1501  acttttaact ggtaataagt aacatattgt agtatatgta acttggttta
    1551  tgttgttgat catgcatatt cttcagtgtg gttcccacca taagttatgc
    1601  gtgcttggct tcatactact ttatatatat gttatttagt gctttttatt
    1651  taggtaactg tgtacccccg cccattctag cgtggttccc accttaatag
    1701  aatggtgcaa caaagactat tgttatggtt tgaggaggtg actctgtggg
    1751  tcgttaagct gttcaatagt tggcgttaaa aaaaaaaaaa aaa