Sequence of DPV Chilli veinal mottle virus

Chilli veinal mottle virus isolate CHL38 polyprotein gene, partial cds.

ACC No: EF213680

Dated: 2007-11-01 | Length: 1801 | CRC: 2142924294

                
ID   EF213680; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   EF213680;
XX
DT   01-NOV-2007 (Rel. 93, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 1)
XX
DE   Chilli veinal mottle virus isolate CHL38 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Chilli veinal mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1801
RA   Reddy C.N.L., Devaraju, Madhavi Reddy K., Krishnareddy M.,
RA   Venkataravanappa V., Jalali S., Usha Rani T.R., Raman L., Jalali S.,
RA   Ajith Prasad H.N.;
RT   "Molecular genetic diversity of Chilli veinal mottle virus infecting chilli
RT   pepper in India";
RL   Unpublished.
XX
RN   [2]
RP   1-1801
RA   Reddy C.N.L., Venkataravanappa V., Madhavi Reddy K., Usha Rani T.R.,
RA   Krishnareddy M.;
RT   ;
RL   Submitted (28-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1801
FT                   /organism="Chilli veinal mottle virus"
FT                   /specific_host="Capsicum annuum"
FT                   /lab_host="Datura metel"
FT                   /isolate="CHL38"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Trissur; Kerala"
FT                   /isolation_source="leaf"
FT                   /virion
FT                   /db_xref="taxon:52280"
FT   CDS             <1. .1494
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ABQ23262.1"
FT                   /translation="GQPSTVVDNTLMVLVAMRYSLRRLGINYKDQNDRCVFFANGDDLI
FT                   VSVPPNDEWILDSLQEPFSELGLSYDFSERTKDRSELWFMSHQGILIEGQYVPKLEPER
FT                   IVSILEWDRAEQPEHRLEAICASMIEAWGYKELLHEIRLFYKWVIEQAPYSQLVLEGKA
FT                   PYISETALRCLYMSEHGESDISPYLKALVERARKEELDDKGGEVIHQSGESVDAGRVKG
FT                   EDSTSKSADKQATEKKNKVSGQAQSQSRQSEMEVPQVRDRDVNVGTSGTFTIPRLKGIS
FT                   SKLTIPKIKTKAVVNLEHLLDYAPEQIHLSNTRALQSQFASWYEGVKNDYDVTDEQMQI
FT                   ILNGLMVWCIENGTSPNINGYWVMMDGDEQVEYPIKPLIDHAKPSFRQIMAHFSNLAEA
FT                   YIEKRNSEKPYMPRYGLQRNLTDMSLARYAFDFYEMTSKTPVRAREAHILMKAAALRGI
FT                   SNRMFGLDGRVGTQEENTERHTAEDVNRNMHNLLGVRGL"
FT   mat_peptide     <1. .630
FT                   /product="nuclear inclusion b protein"
FT                   /note="Nib"
FT   mat_peptide     631. .1491
FT                   /product="coat protein"
FT   3'UTR           1495. .1801
XX
SQ   Sequence 1801 BP; 585 A; 328 C; 415 G; 473 T; 0 other;

ef213680 Length: 1801  01-NOV-2007  Type: N  Check: 1096  ..

       1  ggacaaccat cgacagtcgt ggacaacaca ctcatggtat tagtggcaat
      51  gagatactca ttacgccgac tgggcatcaa ctacaaggat cagaacgaca
     101  gatgtgtttt ctttgcaaat ggtgacgatc taatcgtttc agtgccacca
     151  aacgatgagt ggatattaga ttccttacaa gagccatttt cagaactggg
     201  cttgtcatat gactttagtg agcggacaaa agatagatca gaactctggt
     251  tcatgtccca tcaaggaatt ctaattgagg gtcagtatgt tccaaaactt
     301  gagcctgagc gcatagtttc aattcttgaa tgggatagag ctgaacagcc
     351  agaacaccga cttgaagcca tttgtgcgtc catgattgaa gcgtggggtt
     401  acaaagaact attacatgag ataaggcttt tctataaatg ggtgattgaa
     451  caagcaccat attcccaact tgtccttgag gggaaggcac catatatttc
     501  agaaacagca ttgaggtgtc tctacatgag tgagcatgga gaaagtgaca
     551  ttagcccata tctgaaagca cttgttgaaa gggctaggaa ggaagaatta
     601  gatgacaagg gtggagaggt tatccatcaa tctggagaga gtgttgatgc
     651  tggaagagtg aaaggtgaag actcaacaag caaatcagct gacaaacaag
     701  ccacggagaa gaagaacaag gtaagtggac aagctcagtc acaatctcgt
     751  cagagcgaga tggaggtacc ccaagttcga gacagagacg taaacgttgg
     801  gacatcagga acattcacaa taccacgtct caagggtatt tcttcaaagt
     851  taacaatacc gaaaatcaaa acaaaggctg ttgttaacct tgaacacctt
     901  cttgattatg cccctgaaca aatacatttg agtaatacaa gggcattaca
     951  atcacaattt gcatcttggt atgaaggtgt taaaaatgac tacgatgtca
    1001  cagatgaaca gatgcaaata atattaaatg gattgatggt ttggtgtatt
    1051  gagaatggaa cgtcaccaaa cattaatggt tattgggtta tgatggatgg
    1101  agatgaacaa gttgaatacc caataaagcc attgattgat catgccaaac
    1151  cgtcatttag acaaatcatg gcgcacttta gcaacctcgc tgaagcgtac
    1201  attgagaagc gcaactctga gaagccatat atgccaagat atgggcttca
    1251  aagaaacctt accgatatgt cattagcgcg atatgctttt gatttctatg
    1301  aaatgacttc aaaaactccc gtccgagctc gtgaggcaca cattctaatg
    1351  aaggcagctg cattgcgtgg catcagcaac aggatgttcg gactggacgg
    1401  tagggtaggc acgcaggagg agaacaccga acgccacaca gcagaggatg
    1451  tgaataggaa tatgcataat ctgctaggtg ttcgaggatt gtaatatctt
    1501  caacttttaa ctagtaataa gtaacgtatt gtagtatatg taacttggtt
    1551  tatgttgtcg atcatgcata ttcttcagag tggtttccac cataagttat
    1601  gtgtgcttgg cttcatacta ctttatatat atgttattta gtacttttta
    1651  tttaagtaac tgtgcacccc cgcccattct agcgtggttc ccaccttaat
    1701  agaatggtgc aacaaagact attgttatgg tttaaggagg tgactctgtg
    1751  ggtcgttaag ctgttcaata gttggcgtta aaaaaaaaaa aaaaaaaaaa
    1801  a