Sequence of DPV Chilli veinal mottle virus

Chilli veinal mottle virus isolate D37 polyprotein gene, partial cds.

ACC No: EF213693

Dated: 2007-11-01 | Length: 1798 | CRC: -1843344342

                
ID   EF213693; SV 1; linear; genomic RNA; STD; VRL; 1798 BP.
XX
AC   EF213693;
XX
DT   01-NOV-2007 (Rel. 93, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 1)
XX
DE   Chilli veinal mottle virus isolate D37 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Chilli veinal mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1798
RA   Reddy C.N.L., Devaraju, Madhavi Reddy K., Krishnareddy M.,
RA   Venkataravanappa V., Jalali S., Usha Rani T.R., Raman L., Jalali S.,
RA   Ajith Prasad H.N.;
RT   "Molecular genetic diversity of Chilli veinal mottle virus infecting chilli
RT   pepper in India";
RL   Unpublished.
XX
RN   [2]
RP   1-1798
RA   Reddy C.N.L., Venkataravanappa V., Madhavi Reddy K., Salil Jalali,
RA   Krishnareddy M.;
RT   ;
RL   Submitted (09-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1798
FT                   /organism="Chilli veinal mottle virus"
FT                   /specific_host="Capsicum annuum"
FT                   /lab_host="Datura metel"
FT                   /isolate="D37"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Savanur; Dharwar; Karnataka"
FT                   /isolation_source="leaf"
FT                   /virion
FT                   /db_xref="taxon:52280"
FT   CDS             <1. .1494
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ABQ23275.1"
FT                   /translation="GQPSAVLDNTLMVLLTMTYSLRRLGINYKYRNERCVFFANGDDLI
FT                   VSLPPRDEWILDSLQQPFSKLGLSYDFNERTRERSELWFMSRLGRLCENQYVPKLEPDR
FT                   IISILEWDICDHPEHRLESICASMIEAWGYKELLHDIMLFYKWVIDQSPYSQLVSEGKA
FT                   PYISETALMCLYMSEHGKSDISPYLRALIEGAKEEELDDEGGEVLHQSGESVDAGRVKG
FT                   EDSSSKPCDKQSTQNKKWVGGQAQPQSRQSEMEVPQVRDRDVNVGTSGTFTIPRLKGIS
FT                   SKLTIPKIKTKAVVNLEHLLDYAPEQIHLSNTRALQSQFASWYEGVKNDYDVTDEQMQI
FT                   ILNGLMVWCIENGTSPNINGYWVMMDGDEQVEYPIKPLIDHAKPSFRQIMAHFSNLAEA
FT                   YIEKRNSEKPYMPRYGLQRNLTDMSLARYAFDFYEMTSKTPVRAREAHIQMKAAALRGV
FT                   SNRMFGLDGRVGTQEEDTERHTAEDVNRNMHNLLGVRGL"
FT   mat_peptide     <1. .630
FT                   /product="nuclear inclusion b protein"
FT                   /note="Nib"
FT   mat_peptide     631. .1491
FT                   /product="coat protein"
FT   3'UTR           1495. .1798
XX
SQ   Sequence 1798 BP; 569 A; 336 C; 404 G; 489 T; 0 other;

ef213693 Length: 1798  01-NOV-2007  Type: N  Check: 6632  ..

       1  ggacaaccat cggcagtctt ggacaacact ctcatggtac tactgacaat
      51  gacatactca ttgcgccggc tgggtattaa ctataaatat cggaacgaaa
     101  gatgtgtttt ctttgccaat ggtgatgatc tgatcgtttc attaccacct
     151  agagatgagt ggatactgga ctccttgcaa caaccattct caaaattagg
     201  cttgtcatat gatttcaatg agcgaacaag agaaagatcc gagctttggt
     251  ttatgtcccg tctggggaga ctatgtgaaa atcagtatgt tccaaagctt
     301  gaacctgacc gtataatctc aattcttgaa tgggacatat gtgatcatcc
     351  ggaacatcga cttgaatcca tttgtgcatc tatgattgaa gcatggggtt
     401  acaaagaatt attacatgat ataatgctct tctataaatg ggtgattgac
     451  caatccccat attcgcaact tgtctctgag gggaaagcac catacatttc
     501  agaaacagca ttgatgtgcc tctacatgag tgaacatgga aaaagtgaca
     551  ttagcccata tctaagagca cttattgagg gagccaagga ggaagagtta
     601  gatgatgagg gcggagaagt cctccatcag tccggagaga gtgttgatgc
     651  tggaagagtt aaaggcgaag actcatcgag caaaccatgt gataaacaat
     701  ccacgcagaa taagaaatgg gttggtggac aagctcagcc acagtctcgc
     751  cagagtgaaa tggaagtacc ccaagttcga gacagagatg ttaatgtcgg
     801  aacctcagga acattcacaa taccgcgtct caagggtatt tcttcaaagt
     851  taacaatacc aaagatcaaa acgaaggctg ttgttaacct tgaacacctt
     901  cttgattatg cccctgaaca aattcatttg agtaatacaa gggcactaca
     951  atcacaattt gcatcttggt atgaaggtgt taagaatgac tatgatgtca
    1001  cagatgaaca gatgcaaata atattgaatg gattgatggt ttggtgtatt
    1051  gagaatggaa cgtcaccaaa tattaatggt tattgggtta tgatggacgg
    1101  agatgaacaa gttgaatacc caataaagcc attaattgat catgccaagc
    1151  cttcatttag acaaatcatg gcgcacttta gcaatcttgc tgaagcgtac
    1201  attgaaaagc gcaattctga gaagccttat atgccaagat atgggcttca
    1251  aagaaacctt accgatatgt cattagcgcg gtatgctttc gatttctatg
    1301  aaatgacatc gaaaactccc gtccgagctc gtgaggcaca cattcaaatg
    1351  aaggcagctg cattacgtgg cgtcagcaac agaatgttcg gactggacgg
    1401  tagggtaggc acacaggaag aggacaccga acggcacaca gcagaggatg
    1451  tgaatagaaa catgcataac ctgctgggcg ttcgaggatt gtgaacttca
    1501  acttttaact agtaataagt aacatattgt agtatatgta acttggttta
    1551  tgttgttgat catgcatatt cttcagtgtg gttcccacca taagttatgt
    1601  gtgcttggct tcatactact ttatatatat gttatttagc actttttatc
    1651  taggtaactg tgaacccccg cccattctag cgtggttccc accttaatgg
    1701  aatggtgcaa caaagactat tgttatggtt taaggaggtg actctttggg
    1751  tcgttaggct attcaatagt tggcgttaaa aaaaaaaaaa aaaaaaaa