Sequence of DPV Chilli veinal mottle virus

Chilli veinal mottle virus isolate TN9 polyprotein gene, partial cds.

ACC No: EF213701

Dated: 2007-11-01 | Length: 1796 | CRC: -2100539501

                
ID   EF213701; SV 1; linear; genomic RNA; STD; VRL; 1796 BP.
XX
AC   EF213701;
XX
DT   01-NOV-2007 (Rel. 93, Created)
DT   01-NOV-2007 (Rel. 93, Last updated, Version 1)
XX
DE   Chilli veinal mottle virus isolate TN9 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Chilli veinal mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1796
RA   Reddy C.N.L., Devaraju, Madhavi Reddy K., Krishnareddy M.,
RA   Venkataravanappa V., Jalali S., Usha Rani T.R., Raman L., Jalali S.,
RA   Ajith Prasad H.N.;
RT   "Molecular genetic diversity of Chilli veinal mottle virus infecting chilli
RT   pepper in India";
RL   Unpublished.
XX
RN   [2]
RP   1-1796
RA   Reddy C.N.L., Venkataravanappa V., Madhavi Reddy K., Salil Jalali,
RA   Krishnareddy M.;
RT   ;
RL   Submitted (09-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1796
FT                   /organism="Chilli veinal mottle virus"
FT                   /specific_host="Capsicum annuum"
FT                   /lab_host="Datura metel"
FT                   /isolate="TN9"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Coimbattore; Tamil Nadu"
FT                   /isolation_source="leaf"
FT                   /virion
FT                   /db_xref="taxon:52280"
FT   CDS             <1. .1494
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ABQ23283.1"
FT                   /translation="GQPSTVVDNTLMVLVAMRYSLRRLNINYKDQNERCVFFANGDDLI
FT                   VSVPPRDEWILDSLQEPFSELGLSYDFNERTRERSELWFMSHQGILIEDQYVPKLEPER
FT                   IVSILEWDRAEQPEHRLEAICASMIEAWGYKELLHEIRLFYKWVIEQAPYSQLVSEGKA
FT                   PYISETALRCLYMSEHGESDISPYLRALIEGAKKEELDDEGGEVAHQAGESVDAGRVKG
FT                   EDSSSKPADKQATEKKDKVSEQAQPQSRQSEMEVPQVRDRDVNVGTSGTFTIPRLKGIS
FT                   SKLTIPKIKTKAVVNLEHLLDYAPEQIHLSNTRALQSQFASWYEGVKNDYDVTDEQMQI
FT                   ILNGLMVWCIENGTSPNINGYWVMMDGDEQVEYPIKPLIDHAKPSFRQIMAHFSNLAEA
FT                   YIEKRNSEKPYMPRYGLQRNLTDMSLARYAFDFYEMTSKTPVRAREAHIQMKAAALRGV
FT                   SNRMFGLDGRVGTQEEDTERHTAEDVNRNMHNLLGVRGL"
FT   mat_peptide     <1. .630
FT                   /product="nuclear inclusion b protein"
FT                   /note="Nib"
FT   mat_peptide     631. .1491
FT                   /product="coat protein"
FT   3'UTR           1495. .1796
XX
SQ   Sequence 1796 BP; 579 A; 332 C; 419 G; 466 T; 0 other;

ef213701 Length: 1796  01-NOV-2007  Type: N  Check: 3122  ..

       1  ggacaaccat cgacagtcgt ggacaacaca ctcatggtac tagtggcaat
      51  gagatactca ttgcgccggc tgaatattaa ctataaagat cagaacgaaa
     101  gatgtgtttt ctttgccaat ggtgatgatc tgatcgtttc agtaccacct
     151  agagatgaat ggatactgga ctccttgcaa gaaccattct cagaattagg
     201  cttgtcatat gatttcaacg agcgaacaag agaaagatca gagctttggt
     251  ttatgtccca tcaagggata ctaattgaag atcagtatgt tccaaagctt
     301  gaacctgagc gtatagtctc aattcttgaa tgggacagag ctgagcaacc
     351  ggaacatcga cttgaagcca tttgtgcatc tatgattgaa gcatggggtt
     401  acaaagagtt attacatgag ataaggctct tctataaatg ggtgattgaa
     451  caagccccat attcgcaact tgtctctgag gggaaagcac catacatttc
     501  agaaacagca ttgaggtgcc tctacatgag tgaacatgga gaaagtgaca
     551  ttagcccata tctaagagca cttattgagg gagccaagaa ggaagagtta
     601  gatgatgagg gcggagaagt cgcccatcag gcgggagaga gtgttgatgc
     651  tggaagagtt aaaggcgaag attcatcaag caaaccagct gataaacaag
     701  ccacagagaa gaaggacaag gtgagtgaac aagctcagcc acagtctcgt
     751  cagagtgaaa tggaagtacc ccaagttcga gacagagacg ttaatgttgg
     801  gacctcaggt acattcacaa taccgcgtct caagggtatc tcttcaaagc
     851  taacaatacc aaagatcaaa acaaaggctg ttgttaacct tgaacatctt
     901  cttgattatg cccctgaaca aatacatttg agtaacacaa gggcattaca
     951  atcacaattt gcatcctggt atgaaggcgt caagaatgac tatgacgtta
    1001  cagatgaaca gatgcaaata atactgaatg gattgatggt ttggtgtatt
    1051  gagaatggaa cgtcaccaaa tattaatggt tattgggtta tgatggacgg
    1101  agatgaacaa gttgaatacc caataaagcc attgattgat catgccaagc
    1151  catcatttag acaaatcatg gcgcatttta gcaatcttgc tgaagcgtac
    1201  attgagaagc gcaactctga gaagccatat atgccaagat atgggcttca
    1251  aagaaacctt accgatatgt cattagcgcg gtatgctttc gatttctatg
    1301  aaatgacatc gaaaactcct gtccgagctc gtgaagcaca cattcaaatg
    1351  aaggcagctg cattacgtgg cgtcagcaac aggatgttcg gactggacgg
    1401  tagggtaggc acacaggaag aggacaccga acggcacaca gcagaggatg
    1451  tgaatagaaa catgcataac ttgctgggcg ttcgaggatt gtgaacttca
    1501  acttttaact agtaataagt aacatattgt agtatatgta acttggttta
    1551  tgttgttgat catgcatatt cttcagtgtg gttcccacca taagttatgt
    1601  gtgcttggct tcatactact ttatatatat gttatttagc actttttatt
    1651  taggtaactg tgaacccccg cccattctag cgtggttccc accttaatgg
    1701  aatggtgcaa caaagactat tgttatggtt taaggaggtg actctttggg
    1751  tcgttaggct attcaatagt tggcgttaaa aaaaaaaaaa aaaaaa