Sequence of DPV Potato virus S

Potato virus S Kh-55 coat protein and 11K genes, partial cds.

ACC No: EF397752

Dated: 2008-02-01 | Length: 1121 | CRC: 538070779

                
ID   EF397752; SV 1; linear; genomic RNA; STD; VRL; 1121 BP.
XX
AC   EF397752;
XX
DT   01-FEB-2008 (Rel. 94, Created)
DT   01-FEB-2008 (Rel. 94, Last updated, Version 1)
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DE   Potato virus S Kh-55 coat protein and 11K genes, partial cds.
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KW   .
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OS   Potato virus S
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
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RN   [1]
RP   1-1121
RA   Pourrahim R., Farzadfar S., Golnaraghi A.R., Ahoonmanesh A.;
RT   "Characterization of PVS isolated from potato in Khorasan province of
RT   Iran";
RL   Unpublished.
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RN   [2]
RP   1-1121
RA   Pourrahim R., Farzadfar S., Golnaraghi A.R., Ahoonmanesh A.;
RT   ;
RL   Submitted (26-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Virology, Plant Pests and Diseases Research Institute,
RL   Tabnak Av., Chamran High Way, P.O. Box: 19395-1454, Tehran, Tehran
RL   1985813131, Iran
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1121
FT                   /organism="Potato virus S"
FT                   /specific_host="Solanum tuberosum"
FT                   /isolate="Kh-55"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran"
FT                   /isolation_source="leaf material"
FT                   /virion
FT                   /db_xref="taxon:12169"
FT   CDS             <1. .865
FT                   /codon_start=2
FT                   /product="coat protein"
FT                   /protein_id="ABQ96348.1"
FT                   /translation="TSSGETPQAPPLVPPPRNVEEHRVGPSQEHGQNEEAMLEQRLIRL
FT                   IELMASKRHNSTLSNISFEIGRPSLEPTPEMRRNPENPYSRFSIDELFKMEIRSVSNNM
FT                   ANTEQMAQITADIAGLGVPTEHVAGVILKVVIMCASVSSSVYLDPAGTVEFPTGAVPLD
FT                   SIIAIMKNRAGLRKVCRLYAPVVWNYMLVQNRPPSDWQAMGFQWNARFAAFDTFDYVTN
FT                   GAAVQPVEGLIRRPTPEETIAHNAHKSMAIDKSNRNERLANTNVEYTGGMLGAEIVRNH
FT                   RNAINQ"
FT   CDS             862. .>1121
FT                   /codon_start=1
FT                   /product="11K"
FT                   /protein_id="ABQ96349.1"
FT                   /translation="MKADRLAMLLLCVHQLGYILPVEVCVNIISLSAGPVSGGRSTYAR
FT                   KRRARSIGRCWRCYRVYPPICNSKCDNRTCRPGISQNYKVVA"
XX
SQ   Sequence 1121 BP; 303 A; 256 C; 302 G; 260 T; 0 other;

ef397752 Length: 1121  01-FEB-2008  Type: N  Check: 4939  ..

       1  aacaagctca ggagagacac cacaagcacc gccgcttgtg ccgccacccc
      51  ggaatgtaga ggagcataga gttggtccaa gtcaagagca cgggcagaat
     101  gaagaggcta tgctggagca gaggctcatc aggttgattg aactcatggc
     151  ctcaaaaagg cacaattcaa cattgagcaa catctctttt gagataggta
     201  ggccctcact tgagccgacc cctgaaatgc ggaggaatcc ggagaacccg
     251  tactcgcggt tttcaatcga tgagctgttc aagatggaaa tccgatccgt
     301  gtccaacaac atggcgaaca ccgagcaaat ggcacaaatc actgctgaca
     351  tcgctggact tggggtcccc actgagcacg ttgcaggtgt catactgaaa
     401  gtggtgatca tgtgtgcaag cgtgagtagc tctgtttatc tagatccagc
     451  agggactgtg gagttcccaa caggcgcagt gcccttggac tcgatcattg
     501  caattatgaa gaatcgcgcg ggattgagaa aagtgtgcag gttgtatgct
     551  ccagtcgtgt ggaattacat gctagtccaa aataggccac cttcggattg
     601  gcaggccatg ggatttcagt ggaacgcacg cttcgccgca tttgacacat
     651  tcgattatgt gactaatggg gctgcagtcc aacccgtaga ggggctcata
     701  cgcagaccca cacctgagga gacaatagct cacaatgccc acaagagtat
     751  ggcaattgac aagtcgaaca gaaatgagcg attggccaac actaatgttg
     801  agtacactgg agggatgctt ggcgctgaga ttgtgcgcaa tcaccgtaat
     851  gcgatcaacc aatgaaggca gaccgtttag ccatgttatt attgtgtgtc
     901  catcaactgg gttatatttt gccagttgaa gtttgtgtga atataataag
     951  cctaagcgca ggtccagttt ctgggggtcg ttccacttac gctcgtaagc
    1001  ggagggcccg cagcattggg cgatgctggc gatgttatcg tgtctatcca
    1051  cctatttgta attctaagtg tgataataga acatgccgtc caggcattag
    1101  tcaaaattat aaagtagtgg c