Sequence of DPV Barley yellow dwarf virus-PAS

Barley yellow dwarf virus-PAS isolate PAS waw5-9 RNA-dependent RNA polymerase P2 fusion protein gene, partial cds; and movement protein P4 gene, complete cds.

ACC No: EF408153

Dated: 2008-12-29 | Length: 789 | CRC: -715075789

                
ID   EF408153; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
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AC   EF408153;
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DT   31-OCT-2008 (Rel. 97, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 2)
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DE   Barley yellow dwarf virus-PAS isolate PAS waw5-9 RNA-dependent RNA
DE   polymerase P2 fusion protein gene, partial cds; and movement protein P4
DE   gene, complete cds.
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KW   .
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OS   Barley yellow dwarf virus-PAS
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
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RN   [1]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   "Sequence variation of barley yellow dwarf viruses from New Zealand
RT   grasses";
RL   Unpublished.
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RN   [2]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   ;
RL   Submitted (29-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL   Private Bag 92019, Auckland 1142, New Zealand
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FH   Key             Location/Qualifiers
FH
FT   source          1. .789
FT                   /organism="Barley yellow dwarf virus-PAS"
FT                   /host="Microlaena stipoides"
FT                   /isolate="PAS waw5-9"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand:Waikato"
FT                   /note="serogroup: PAS"
FT                   /db_xref="taxon:228581"
FT   CDS             <1. .80
FT                   /codon_start=3
FT                   /product="RNA-dependent RNA polymerase P2 fusion protein"
FT                   /protein_id="ABR26452.1"
FT                   /translation="SVKVTSPHLQSILLSIPENNSHNEY"
FT   CDS             237. .698
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning of subgenomic
FT                   RNA1"
FT                   /protein_id="ABR26453.1"
FT                   /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAQEEEGQILYLDQQA
FT                   GLRYSYSQSTTLKPTLPGQSNSVPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPPL
FT                   RRALSLLNSTPRASNQPWVATLIPSPSAKLPPSPSEPRRLMGRNSKNQR"
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SQ   Sequence 789 BP; 238 A; 201 C; 174 G; 176 T; 0 other;

ef408153 Length: 789  29-DEC-2008  Type: N  Check: 1141  ..

       1  aaagtgtgaa ggtgacatct ccacatctgc aatcaatcct cctctccatt
      51  ccggagaaca actcgcacaa cgaatattga ttaccaaatc ttggcaggat
     101  ttgggatagg gtttatagta ggtatcccct gtacattagc tctcacgtac
     151  tttatttaca ataaagtttc agacactact agagaggtag tgaatgaatt
     201  cagtaggccg tagaggacct agacgagcaa atcaaaatgg cccaagaagg
     251  cggagccgta gaacaattcg gccagtggtt gtggtccaac ccaatcgagc
     301  aggacccaga cgacgaaatg gtcgacgcac aggaagaaga gggccaaatt
     351  ctgtacctgg atcaacaggc aggactgagg tattcatatt ctcagtcgac
     401  aaccttaaag ccaactcttc cgggacaatc aaattcggtc ccagtctatc
     451  gcaatgccca gcgctttcag acggaatact taagtcctac caccgttaca
     501  agatcacaag tatccgtgtt gagtttaagt cacacgcgtc cgccactacg
     551  tcgggcgcta tctttgttga actcgacacc gcgtgcaagc aatcagccct
     601  gggtagctac attaattcct tcaccatcag caaaactgcc tccaagtcct
     651  tcagagccga ggcgattaat gggaaggaat tccaagaatc aacgatagac
     701  caattctggc tactctacaa ggcaaacggg accactactg acaccgctgg
     751  acagtgcatc ataaagataa acgtcagtat gttgactcc