Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus-PAV isolate PAV on14-6 RNA-dependent RNA polymerase P2 fusion protein and coat protein P3 genes, partial cds; and movement protein P4 gene, complete cds.
ACC No: EF408156
Dated: 2008-12-29 | Length: 789 | CRC: -217969101
ID EF408156; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
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AC EF408156;
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DT 31-OCT-2008 (Rel. 97, Created)
DT 29-DEC-2008 (Rel. 98, Last updated, Version 2)
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DE Barley yellow dwarf virus-PAV isolate PAV on14-6 RNA-dependent RNA
DE polymerase P2 fusion protein and coat protein P3 genes, partial cds; and
DE movement protein P4 gene, complete cds.
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KW .
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OS Barley yellow dwarf virus-PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
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RN [1]
RP 1-789
RA Delmiglio C., Pearson M.N.;
RT "Sequence variation of barley yellow dwarf viruses from New Zealand
RT grasses";
RL Unpublished.
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RN [2]
RP 1-789
RA Delmiglio C., Pearson M.N.;
RT ;
RL Submitted (29-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL Private Bag 92019, Auckland 1142, New Zealand
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FH Key Location/Qualifiers
FH
FT source 1. .789
FT /organism="Barley yellow dwarf virus-PAV"
FT /host="Microlaena stipoides"
FT /isolate="PAV on14-6"
FT /mol_type="genomic RNA"
FT /country="New Zealand:Coromandel"
FT /note="serogroup: PAV"
FT /db_xref="taxon:12040"
FT CDS <1. .80
FT /codon_start=3
FT /product="RNA-dependent RNA polymerase P2 fusion protein"
FT /protein_id="ABR26460.1"
FT /translation="SVKVTTPHLQSILLSIPENHSQNEY"
FT CDS 194. .>789
FT /codon_start=1
FT /product="coat protein P3"
FT /note="ORF3; translated from subgenomic RNA1"
FT /protein_id="ABR26461.1"
FT /translation="MNSVGRRGPRRANQNVTRRRRRRTVRPVVVVQPNRAGLRRRNGRR
FT KGRGGANPVFRPTGGAEVFVFSVDNLKANSTGTIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTADTAGQFIITMSVSLMTA"
FT CDS 237. .698
FT /codon_start=1
FT /product="movement protein P4"
FT /note="ORF4; translated via leaky scanning of subgenomic
FT RNA1"
FT /protein_id="ABR26462.1"
FT /translation="MSQEGGAVEQFGQWLWSNPIEQDSDDEMVDAREEEGQILYLDQQA
FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL
FT RQALSLLNSTPRANNQPWLATLIPSQSAGPPQRSSEPKRLTGRNSRNQR"
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SQ Sequence 789 BP; 236 A; 193 C; 186 G; 174 T; 0 other;
ef408156 Length: 789 29-DEC-2008 Type: N Check: 922 ..
1 agagtgtgaa ggtgacgact ccacatctgc aatcaatact gctttccata
51 ccggaaaacc actcacaaaa cgaatattaa ttaccaaatc ttggctgggt
101 ttgggatagg gtttatagtt agtataccct gtacattagc tctcgcgtac
151 tttatttaca ataaagtttc agacaccact agagaggtgg tgaatgaatt
201 cagtaggccg tagaggacct agacgcgcaa atcaaaatgt cacaagaagg
251 aggcgccgta gaacagttcg gccagtggtt gtggtccaac ccaatcgagc
301 aggactcaga cgacgaaatg gtcgacgcaa gggaagagga ggggcaaatc
351 ctgtatttag accaacaggc ggggctgagg tattcgtatt ctcagtcgac
401 aaccttaaag ccaactctac cgggacaatc aaattcggcc ccagtctatc
451 gcaatgccca gcgctttcag acggaatact taagtcctac caccgttaca
501 agatcacaag tatccgtgtt gagtttaagt cacacgcgtc cgcaactacg
551 gcaggcgcta tctttattga actcgacacc gcgtgcaaac aatcagccct
601 ggctagctac attaattcct tcacaatcag caggaccgcc tcaaaggtct
651 tcagagccga agcgattaac gggaaggaat tccaggaatc aacgatagac
701 cagttctgga tgctctacaa ggccaatgga accaccgctg acacggcagg
751 acaattcatt atcacgatga gtgtcagttt gatgacggc