Sequence of DPV Barley yellow dwarf virus-PAV

Barley yellow dwarf virus-PAV isolate PAV T2h5 RNA-dependent RNA polymerase P2 fusion protein and coat protein P3 genes, partial cds; and movement protein P4 gene, complete cds.

ACC No: EF408167

Dated: 2008-12-29 | Length: 789 | CRC: -706964214

                
ID   EF408167; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
XX
AC   EF408167;
XX
DT   31-OCT-2008 (Rel. 97, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 2)
XX
DE   Barley yellow dwarf virus-PAV isolate PAV T2h5 RNA-dependent RNA polymerase
DE   P2 fusion protein and coat protein P3 genes, partial cds; and movement
DE   protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus-PAV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
XX
RN   [1]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   "Sequence variation of barley yellow dwarf viruses from New Zealand
RT   grasses";
RL   Unpublished.
XX
RN   [2]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   ;
RL   Submitted (29-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL   Private Bag 92019, Auckland 1142, New Zealand
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .789
FT                   /organism="Barley yellow dwarf virus-PAV"
FT                   /host="Anthoxanthum redolens"
FT                   /isolate="PAV T2h5"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand:Tongariro"
FT                   /note="serogroup: PAV"
FT                   /db_xref="taxon:12040"
FT   CDS             <1. .80
FT                   /codon_start=3
FT                   /product="RNA-dependent RNA polymerase P2 fusion protein"
FT                   /protein_id="ABR26492.1"
FT                   /translation="SVKVTTPHLQSILLSIPENHSQNEY"
FT   CDS             194. .>789
FT                   /codon_start=1
FT                   /product="coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1"
FT                   /protein_id="ABR26493.1"
FT                   /translation="MNLVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT                   KGRGGANPVFRPTGGAEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSIRVEFKSHASATTAGAIFIELDTACKQSALASYINSFTISKTASKVFRAEAINGKEF
FT                   QESTIDQFWMLYKANGTAADTAGQFIITMSVSLMTA"
FT   CDS             237. .698
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning of subgenomic
FT                   RNA1"
FT                   /protein_id="ABR26494.1"
FT                   /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT                   GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQQ
FT                   RPALSLLNSTPRANNQPWLATLIPSQSARPPQRSSEPKRLTGRNSRNQR"
XX
SQ   Sequence 789 BP; 234 A; 193 C; 188 G; 174 T; 0 other;

ef408167 Length: 789  29-DEC-2008  Type: N  Check: 1612  ..

       1  agagtgtgaa ggtgacgact ccacatctgc aatcaatact gctttccata
      51  ccggaaaacc actcacaaaa cgaatattaa ttatcaaatc ttggctgggt
     101  ttgggatagg gtttatagtt agtataccct gtacattagc tctcgcgtac
     151  tttatttaca ataaagtttc agacaccact agagaggtgg tgaatgaatt
     201  tagtaggccg tagaggacct agacgcgcaa atcaaaatgg cacaagaagg
     251  aggcgccgta gaacagttcg gccagtggtt gtggtccaac ccaatcgagc
     301  aggacccaga cgacgaaatg gtcgacgcaa gggaagagga ggggcaaatc
     351  ctgtatttag accaacaggc ggggctgagg tattcgtatt ctcagtcgac
     401  aaccttaaag ccaactcttc cggggcaatc aaattcggcc ccagtctatc
     451  gcaatgccca gcgctttcag acggaatact taagtcctac caccgttaca
     501  agatcacaag tatccgtgtt gagtttaagt cacacgcgtc cgcaacaacg
     551  gccggcgcta tctttattga actcgacacc gcgtgcaaac aatcagccct
     601  ggctagctac attaattcct tcacaatcag caagaccgcc tcaaaggtct
     651  tcagagccga agcgattaac gggaaggaat tccaggaatc aacgatagac
     701  cagttctgga tgctctacaa ggccaatgga accgccgctg acacggcagg
     751  acaattcatt atcacgatga gtgtcagttt gatgacggc