Sequence of DPV Barley yellow dwarf virus-PAV

Barley yellow dwarf virus-PAV isolate PAV DB2 RNA-dependent RNA polymerase P2 fusion protein and coat protein P3 genes, partial cds; and movement protein P4 gene, complete cds.

ACC No: EF408170

Dated: 2008-12-29 | Length: 789 | CRC: -1898523176

                
ID   EF408170; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
XX
AC   EF408170;
XX
DT   31-OCT-2008 (Rel. 97, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 2)
XX
DE   Barley yellow dwarf virus-PAV isolate PAV DB2 RNA-dependent RNA polymerase
DE   P2 fusion protein and coat protein P3 genes, partial cds; and movement
DE   protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus-PAV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
XX
RN   [1]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   "Sequence variation of barley yellow dwarf viruses from New Zealand
RT   grasses";
RL   Unpublished.
XX
RN   [2]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   ;
RL   Submitted (29-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL   Private Bag 92019, Auckland 1142, New Zealand
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .789
FT                   /organism="Barley yellow dwarf virus-PAV"
FT                   /host="Festuca novae-zelandiae"
FT                   /isolate="PAV DB2"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand:Otago"
FT                   /note="serogroup: PAV"
FT                   /db_xref="taxon:12040"
FT   CDS             <1. .80
FT                   /codon_start=3
FT                   /product="RNA-dependent RNA polymerase P2 fusion protein"
FT                   /protein_id="ABR26501.1"
FT                   /translation="SVKVTTPHLQSILLSIPENHSQNEY"
FT   CDS             194. .>789
FT                   /codon_start=1
FT                   /product="coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1"
FT                   /protein_id="ABR26502.1"
FT                   /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT                   KGRGGANTVFRPTGGTEVFVFSVDNIKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTTSKTASKTFRSEAINGKEF
FT                   QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTA"
FT   CDS             237. .698
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning of subgenomic
FT                   RNA1"
FT                   /protein_id="ABR26503.1"
FT                   /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT                   GLRYSYSQLTTLKPTPPGQSNSAPVYRNAQRFQTEYSSPTIVTRSQVSELSLSHTRPPL
FT                   RQALSLLSSTPRASNQPWVATLIPSPPARPPPRPSGQRQLMGRNSRNQR"
XX
SQ   Sequence 789 BP; 235 A; 196 C; 185 G; 173 T; 0 other;

ef408170 Length: 789  29-DEC-2008  Type: N  Check: 1285  ..

       1  agagtgtgaa ggtgacgact ccacatctgc aatcaatact gctttccata
      51  ccggaaaacc actcacaaaa cgaatattaa ttaccaaatc ttagctgggt
     101  ttgggatagg gtttatagtt agtataccct gtacattagc tctcgcgtac
     151  tttatttaca ataaagtttc agacaccact agagaggtgg tgaatgaatt
     201  cagtaggccg tagaggacct agacgcgcaa atcaaaatgg cccaagaagg
     251  cggcgccgta gaacagttcg gccagtggtt gtggtccaac ccaatcgagc
     301  aggacccaga cgacgaaatg gtcgacgcaa gggaagagga ggggcaaata
     351  ctgtatttag accaacaggc gggactgagg tattcgtatt ctcagttgac
     401  aacattaaag ccaactcctc cggggcaatc aaattcggcc ccagtctatc
     451  gcaatgccca gcgctttcag acggaatact caagtcctac catcgttaca
     501  agatcacaag tatccgagtt gagtttaagt cacacgcgtc cgccactacg
     551  gcaggcgcta tctttattga gctcgacacc gcgtgcaagc aatcagccct
     601  gggtagctac attaattcct tcaccaccag caagaccgcc tccaagacct
     651  tccggtcaga ggcaattaat gggaaggaat tccaggaatc aacgatagac
     701  caattttgga tgctctacaa ggccaatgga accaccactg acacggcagg
     751  acaatttatc attacgatga gcgtcagttt gatgacggc