Sequence of DPV Barley yellow dwarf virus-PAV

Barley yellow dwarf virus-PAV isolate PAV SI-o3 RNA-dependent RNA polymerase P2 fusion protein and coat protein P3 genes, partial cds; and movement protein P4 gene, complete cds.

ACC No: EF408175

Dated: 2008-12-29 | Length: 788 | CRC: 463344136

                
ID   EF408175; SV 1; linear; genomic RNA; STD; VRL; 788 BP.
XX
AC   EF408175;
XX
DT   31-OCT-2008 (Rel. 97, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 2)
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DE   Barley yellow dwarf virus-PAV isolate PAV SI-o3 RNA-dependent RNA
DE   polymerase P2 fusion protein and coat protein P3 genes, partial cds; and
DE   movement protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus-PAV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
XX
RN   [1]
RP   1-788
RA   Delmiglio C., Pearson M.N.;
RT   "Sequence variation of barley yellow dwarf viruses from New Zealand
RT   grasses";
RL   Unpublished.
XX
RN   [2]
RP   1-788
RA   Delmiglio C., Pearson M.N.;
RT   ;
RL   Submitted (29-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL   Private Bag 92019, Auckland 1142, New Zealand
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FH   Key             Location/Qualifiers
FH
FT   source          1. .788
FT                   /organism="Barley yellow dwarf virus-PAV"
FT                   /host="Avena sativa"
FT                   /isolate="PAV SI-o3"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand:Canterbury"
FT                   /note="serogroup: PAV"
FT                   /db_xref="taxon:12040"
FT   CDS             <1. .79
FT                   /codon_start=2
FT                   /product="RNA-dependent RNA polymerase P2 fusion protein"
FT                   /protein_id="ABR26516.1"
FT                   /translation="SVKVTTPHLQSILLSIPENHSQNEY"
FT   CDS             193. .>788
FT                   /codon_start=1
FT                   /product="coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1"
FT                   /protein_id="ABR26517.1"
FT                   /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT                   KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKTFRSEAINGKEF
FT                   QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTA"
FT   CDS             236. .697
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning of subgenomic
FT                   RNA1"
FT                   /protein_id="ABR26518.1"
FT                   /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT                   GLRYSYSQLTTLKPTPPGQSNSAPVYRNAQRFQTEYSSPTIVTRSQVSELSLSHTRPPL
FT                   RQALSLLSSTPRASNQPWVATLIPSPSARPPPKPSGQRQLMGRNSRNQR"
XX
SQ   Sequence 788 BP; 235 A; 194 C; 184 G; 175 T; 0 other;

ef408175 Length: 788  29-DEC-2008  Type: N  Check: 6734  ..

       1  gagtgtgaag gtgacgactc cacatctgca atcaatactg ctttccatac
      51  cggaaaacca ctcacaaaac gaatattaat taccaaatct tagctgggtt
     101  tgggataggg tttatagtta gtataccctg tacattagct ctcgcgtact
     151  ttatttacaa taaagtttca gacaccacta gagaggtggt gaatgaattc
     201  agtaggccgt agaggaccta gacgcgcaaa tcaaaatggc acaagaagga
     251  ggcgccgtag aacagttcgg ccagtggttg tggtccaacc caatcgagca
     301  ggacccagac gacgaaatgg tcgacgcaag ggaagaggag gggcaaatcc
     351  tgtatttaga ccaacaggcg ggactgaggt attcgtattc tcagttgaca
     401  accttaaagc caactcctcc ggggcaatca aattcggccc cagtctatcg
     451  caatgcccag cgctttcaga cggaatactc aagtcctacc atcgttacaa
     501  gatcacaagt atccgagttg agtttaagtc acacgcgtcc gccactacgg
     551  caggcgctat ctttattgag ctcgacaccg cgtgcaagca atcagccctg
     601  ggtagctaca ttaattcctt caccatcagc aagaccgcct ccaaaacctt
     651  ccggtcagag gcaattaatg ggaaggaatt ccaggaatca acgatagacc
     701  aattttggat gctctacaag gccaatggaa ccaccactga cacggcagga
     751  caatttatca ttacgatgag tgtcagtttg atgacggc