Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus-PAV isolate PAV DB2b RNA-dependent RNA polymerase P2 fusion protein and coat protein P3 genes, partial cds; and movement protein P4 gene, complete cds.
ACC No: EF408178
Dated: 2008-12-29 | Length: 789 | CRC: 1342526326
ID EF408178; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
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AC EF408178;
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DT 31-OCT-2008 (Rel. 97, Created)
DT 29-DEC-2008 (Rel. 98, Last updated, Version 2)
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DE Barley yellow dwarf virus-PAV isolate PAV DB2b RNA-dependent RNA polymerase
DE P2 fusion protein and coat protein P3 genes, partial cds; and movement
DE protein P4 gene, complete cds.
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KW .
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OS Barley yellow dwarf virus-PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
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RN [1]
RP 1-789
RA Delmiglio C., Pearson M.N.;
RT "Sequence variation of barley yellow dwarf viruses from New Zealand
RT grasses";
RL Unpublished.
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RN [2]
RP 1-789
RA Delmiglio C., Pearson M.N.;
RT ;
RL Submitted (29-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL Private Bag 92019, Auckland 1142, New Zealand
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FH Key Location/Qualifiers
FH
FT source 1. .789
FT /organism="Barley yellow dwarf virus-PAV"
FT /host="Festuca novae-zelandiae"
FT /isolate="PAV DB2b"
FT /mol_type="genomic RNA"
FT /country="New Zealand:Otago"
FT /note="serogroup: PAV"
FT /db_xref="taxon:12040"
FT CDS <1. .80
FT /codon_start=3
FT /product="RNA-dependent RNA polymerase P2 fusion protein"
FT /protein_id="ABR26525.1"
FT /translation="SVKVTTPHLQSILLSIPENHSQNEY"
FT CDS 194. .>789
FT /codon_start=1
FT /product="coat protein P3"
FT /note="ORF3; translated from subgenomic RNA1"
FT /protein_id="ABR26526.1"
FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKTFRSEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTA"
FT CDS 237. .698
FT /codon_start=1
FT /product="movement protein P4"
FT /note="ORF4; translated via leaky scanning of subgenomic
FT RNA1"
FT /protein_id="ABR26527.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT GLRYSYSQLTTLKPTPPGQSNSAPVYRNAQRFQTEYSSPTIVTRSQVSELSLSHTRPPL
FT RQALSLLSSTPRASNQPWVATLIPSPSARPPPRPSGQRQLMGRNSRNQR"
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SQ Sequence 789 BP; 235 A; 195 C; 185 G; 174 T; 0 other;
ef408178 Length: 789 29-DEC-2008 Type: N Check: 2461 ..
1 agagtgtgaa ggtgacgact ccacatctgc aatcaatact gctttccata
51 ccggaaaacc actcacaaaa cgaatattaa ttaccaaatc ttagctgggt
101 ttgggatagg gtttatagtt agtataccct gtacattagc tctcgcgtac
151 tttatttaca ataaagtttc agacaccact agagaggtgg tgaatgaatt
201 cagtaggccg tagaggacct agacgcgcaa atcaaaatgg cacaagaagg
251 aggcgccgta gaacagttcg gccagtggtt gtggtccaac ccaatcgagc
301 aggacccaga cgacgaaatg gtcgacgcaa gggaagagga ggggcaaatc
351 ctgtatttag accaacaggc gggactgagg tattcgtatt ctcagttgac
401 aaccttaaag ccaactcctc cggggcaatc aaattcggcc ccagtctatc
451 gcaatgccca gcgctttcag acggaatact caagtcctac catcgttaca
501 agatcacaag tatccgagtt gagtttaagt cacacgcgtc cgccactacg
551 gcaggcgcta tctttattga gctcgacacc gcgtgcaagc aatcagccct
601 gggtagctac attaattcct tcaccatcag caagaccgcc tccaagacct
651 tccggtcaga ggcaattaat gggaaggaat tccaggaatc aacgatagac
701 caattttgga tgctctacaa ggccaatgga accaccactg acacggcagg
751 acaattcatc attacgatga gtgtcagttt gatgacggc