Sequence of DPV Barley yellow dwarf virus-MAV

Barley yellow dwarf virus-MAV isolate MAV SI-wc1 RNA-dependent RNA polymerase P2 fusion protein and coat protein P3 genes, partial cds; and movement protein P4 gene, complete cds.

ACC No: EF408182

Dated: 2008-12-29 | Length: 786 | CRC: 2104767614

                
ID   EF408182; SV 1; linear; genomic RNA; STD; VRL; 786 BP.
XX
AC   EF408182;
XX
DT   31-OCT-2008 (Rel. 97, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 2)
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DE   Barley yellow dwarf virus-MAV isolate MAV SI-wc1 RNA-dependent RNA
DE   polymerase P2 fusion protein and coat protein P3 genes, partial cds; and
DE   movement protein P4 gene, complete cds.
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KW   .
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OS   Barley yellow dwarf virus-MAV
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Luteovirus.
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RN   [1]
RP   1-786
RA   Delmiglio C., Pearson M.N.;
RT   "Sequence variation of barley yellow dwarf viruses from New Zealand
RT   grasses";
RL   Unpublished.
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RN   [2]
RP   1-786
RA   Delmiglio C., Pearson M.N.;
RT   ;
RL   Submitted (29-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL   Private Bag 92019, Auckland 1142, New Zealand
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FH   Key             Location/Qualifiers
FH
FT   source          1. .786
FT                   /organism="Barley yellow dwarf virus-MAV"
FT                   /host="Triticum aestivum"
FT                   /isolate="MAV SI-wc1"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand:Canterbury"
FT                   /note="serogroup: MAV"
FT                   /db_xref="taxon:12038"
FT   CDS             <1. .80
FT                   /codon_start=3
FT                   /product="RNA-dependent RNA polymerase P2 fusion protein"
FT                   /protein_id="ABR26537.1"
FT                   /translation="SVKVTTPHLQSILLSIPENHSHNEY"
FT   CDS             194. .>786
FT                   /codon_start=1
FT                   /product="coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1"
FT                   /protein_id="ABR26538.1"
FT                   /translation="MSLVGRRNNRRRNGPRRARRVSAVRRMVVVQPNRAGPKRRTRRRT
FT                   RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT
FT                   NVKVEFKSHASANTVGAMFVELDTSCSQSTLGSYINSFTISKSATKTFTAQQIDGKEFR
FT                   ESTVNQFYMLYKANGTTSDTAGQFIITIRVANMTP"
FT   CDS             231. .695
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning of subgenomic
FT                   RNA1"
FT                   /protein_id="ABR26539.1"
FT                   /translation="MAQGEQGALAQFGEWLWSNPIEPDPNDELVDAQEEEGQILYLDQQ
FT                   AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTRPP
FT                   IQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKPSPPNRLTGRNSGRAR"
XX
SQ   Sequence 786 BP; 238 A; 197 C; 172 G; 179 T; 0 other;

ef408182 Length: 786  29-DEC-2008  Type: N  Check: 6364  ..

       1  agagtgtgaa ggtgactact ccacatctgc aatcaatact actttccata
      51  ccggaaaacc actcacataa cgaatattaa ttatcaaatc ttagctgggt
     101  ttggaatagg gtttatagtt tctataccct gtacattagc tctcacgtac
     151  tttatttaca ataaagtttc agacactact agagaggtag tgaatgagtt
     201  tagtaggccg tagaaataac cgcaggagaa atggcccaag gagagcaagg
     251  cgcgttagcg cagttcggag aatggttgtg gtccaaccca atcgagccgg
     301  acccaaacga cgaactcgtc gacgcacaag aggaggaggg gcaaatctta
     351  tatctggacc agcaggcagg actgaggtat tcgtattctc agtcaacgac
     401  cttaaggcca actcctcagg gacaatcaag ttcggtcccg acctttcgca
     451  atgcccagcg ctttcaggtg gaatactcaa gtcctaccac cgttacaaga
     501  tcacaaacgt caaggttgag tttaagtcac acgcgtccgc caatacagtc
     551  ggcgcaatgt ttgttgaact cgacacttcg tgctcacaat caaccttggg
     601  tagctacatt aactcattca ccatctcaaa atcagcaacc aaaaccttca
     651  ccgcccaaca gattgacggg aaggaattca gggagagcac ggtgaaccaa
     701  ttttacatgc tatacaaggc gaacggtact acgtcggaca ccgccgggca
     751  attcatcatc acaatacgcg ttgccaatat gactcc