Sequence of DPV Tomato yellow leaf curl virus

Tomato yellow leaf curl virus isolate recombinant MmA-C.18 13 dpi type IV REn and TrAP genes, complete cds; and Rep gene, partial cds.

ACC No: EF423649

Dated: 2007-06-27 | Length: 838 | CRC: 806077006

                
ID   EF423649; SV 1; linear; genomic DNA; STD; VRL; 838 BP.
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AC   EF423649;
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DT   27-JUN-2007 (Rel. 92, Created)
DT   27-JUN-2007 (Rel. 92, Last updated, Version 1)
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DE   Tomato yellow leaf curl virus isolate recombinant MmA-C.18 13 dpi type IV
DE   REn and TrAP genes, complete cds; and Rep gene, partial cds.
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KW   .
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OS   Tomato yellow leaf curl virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN   [1]
RP   1-838
RX   PUBMED; 17467025.
RA   Garcia-Andres S., Tomas D.M., Sanchez-Campos S., Navas-Castillo J.,
RA   Moriones E.;
RT   "Frequent occurrence of recombinants in mixed infections of tomato yellow
RT   leaf curl disease-associated begomoviruses";
RL   Virology 365(1):210-219(2007).
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RN   [2]
RP   1-838
RA   Garcia-Andres S., Tomas D.M., Sanchez-Campos S., Navas-Castillo J.,
RA   Moriones E.;
RT   ;
RL   Submitted (02-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   Fruticultura Subtropical y Fitopatologia, Estacion Experimental La Mayora,
RL   CSIC, Algarrobo-Costa, Malaga 29750, Spain
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FH   Key             Location/Qualifiers
FH
FT   source          1. .838
FT                   /organism="Tomato yellow leaf curl virus"
FT                   /isolate="recombinant MmA-C.18 13 dpi type IV"
FT                   /mol_type="genomic DNA"
FT                   /country="Spain:Malaga"
FT                   /note="TYLCSV/TYLCV recombinant"
FT                   /db_xref="taxon:10832"
FT   CDS             complement(61. .465)
FT                   /codon_start=1
FT                   /product="REn"
FT                   /protein_id="ABR27545.1"
FT                   /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT                   ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLKVFRHQVLKYLDSIGVISINN
FT                   VIRAVDHVLYDVFENTINVIEQHEIKYNLY"
FT   CDS             complement(206. .613)
FT                   /codon_start=1
FT                   /product="TrAP"
FT                   /protein_id="ABR27546.1"
FT                   /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRIDLDCGCSYYQHL
FT                   NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT                   HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT   CDS             complement(522. .>838)
FT                   /codon_start=3
FT                   /product="Rep"
FT                   /protein_id="ABR27547.1"
FT                   /translation="WYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTI
FT                   FLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFASINQGPTQDSQEETNKA
FT                   "
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SQ   Sequence 838 BP; 215 A; 151 C; 179 G; 293 T; 0 other;

ef423649 Length: 838  27-JUN-2007  Type: N  Check: 820  ..

       1  ttctaaccca gtgtatgcta cgttgaaaat acgtatctat ttttatgatg
      51  ctgtaacaaa ttaataaaga ttgtatttta tttcatgttg ttcaattaca
     101  tttattgtgt tctcaaatac atcatacaat acatgatcaa ctgctctgat
     151  tacattgtta attgaaatta caccaatact atctaaatac ttaagaactt
     201  gatgtctaaa tacttttaag aaacgaccag tctgaggctg taatgtcgtc
     251  caaattcgga agttgagaaa acatttgtga atccccaata ccttcctgat
     301  gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa
     351  atggcctctg gctgtgttct gttatcttga aatagagggg attgtttatc
     401  tcccagataa aaacgccatt ctctgcctga ggagcagtga tgagttcccc
     451  tgtgcgtgaa tccatgattg ttgcagttga ggtgttggta gtatgagcag
     501  ccacagtcta ggtctatacg cttacgcctt attggtttct tcttggctat
     551  cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg
     601  acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc
     651  ttcgtctaga tattccctat atgaggaggt aggtcctgga ttgcagagga
     701  agatagtggg aattccccct ttaatttgaa tgggcttccc gtactttgtg
     751  ttgctttgcc agtccctctg ggcccccatg aattctttga agtgctttaa
     801  ataatgcggg tctacgtcat caatgacgtt gtaccatg