Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus isolate AB12a polyprotein P2 gene, partial cds.
ACC No: EF426804
Dated: 2009-09-11 | Length: 2097 | CRC: 1059793540
ID EF426804; SV 1; linear; genomic RNA; STD; VRL; 2097 BP.
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AC EF426804;
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DT 31-MAY-2009 (Rel. 101, Created)
DT 11-SEP-2009 (Rel. 102, Last updated, Version 2)
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DE Grapevine fanleaf virus isolate AB12a polyprotein P2 gene, partial cds.
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KW .
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OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup A.
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RN [1]
RP 1-2097
RX PUBMED; 19409944.
RA Vigne E., Marmonier A., Komar V., Lemaire O., Fuchs M.;
RT "Genetic structure and variability of virus populations in cross-protected
RT grapevines superinfected by Grapevine fanleaf virus";
RL Virus Res. 144(1-2):154-162(2009).
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RN [2]
RP 1-2097
RA Vigne E., Marmonier A., Fuchs M.;
RT ;
RL Submitted (07-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL UMR SVQV, INRA, 28 rue de Herrlisheim, Colmar 68021, France
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FH Key Location/Qualifiers
FH
FT source 1. .2097
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /isolate="AB12a"
FT /mol_type="genomic RNA"
FT /country="France"
FT /isolation_source="Vitis vinifera cultivar Gewurztraminer"
FT /db_xref="taxon:12274"
FT CDS <1. .>2097
FT /codon_start=1
FT /product="polyprotein P2"
FT /db_xref="UniProtKB/TrEMBL:C4MBU6"
FT /protein_id="ABR09869.1"
FT /translation="PHLGGSVEQWLAAIETDPSFRQTVKEDVQANRERPDAIRMFSWKV
FT GFGPIDNPNNCNWHFVLTGERLAQPTRPAKVDEVVVVPQPKKVVIPSPPPPPAPYFRVV
FT GAFAPTRSGYIRATVERLTREREESRAAALFAELPLEYPQGVPLKLSLAMKFAMLKHTT
FT WRKWYDTSDERLTEAHPGGPCLPPSPPIQKPPSFQERVRESCRIKSCARAFALETSLGL
FT NRAWVGLVDIPSTSVCCADGRTTGGQTIAQEADPLQHRVSTSVAPGRAQWISERRQALR
FT RREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPPLRSAYAPRGLWRGPPTR
FT ANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMSAVVIDALEIAINPFGMPGN
FT PTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPGLQYSQEEPRRESIIRLYVA
FT STNATVDTDSVLAAISVGTLRQHVGSMHYRTVASTVHQAQVQGTTLRATMMGNTVVVSP
FT EGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFSIRSRSRSVRIDRNVDLPQL
FT EAEPRLSSTVRGLAGRGVVYIPKDCQANRYLGTLNIRDMISDFKGVQYEKWITAGLVMP
FT TFKIVVRLPANAFTGLTWVMSFDAYNRITSRITASADPVYTLSVPHWLIHHKKGTFSCE
FT IDYGE"
FT mat_peptide <1. .717
FT /product="2A"
FT /note="putative homing protein"
FT mat_peptide 718. .1761
FT /product="2B"
FT /note="movement protein"
FT mat_peptide 1762. .>2097
FT /product="2C"
FT /note="coat protein"
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SQ Sequence 2097 BP; 508 A; 502 C; 580 G; 507 T; 0 other;
ef426804 Length: 2097 11-SEP-2009 Type: N Check: 7058 ..
1 cctcatttag ggggttctgt tgaacaatgg ctggcggcca ttgaaactga
51 tccctccttc cgccaaactg tcaaggagga cgtccaggca aaccgggagc
101 gtccagacgc tatccggatg ttttcctgga aagtgggatt cgggcccatt
151 gataacccga ataattgcaa ctggcatttc gtccttacgg gcgaaaggct
201 agcgcagccg acccggccgg ctaaagtcga tgaggttgtg gtggtgccgc
251 aaccgaagaa ggtggtgatt ccatcaccac ctcctccccc ggctccctac
301 tttagggttg ttggggcttt tgcaccaacc aggtccgggt acatacgggc
351 cactgtggaa agactcaccc gggaacggga agagtcgaga gctgcggcac
401 tctttgccga actgccattg gagtaccctc agggtgttcc tttgaagttg
451 agcctggcga tgaaattcgc catgctcaaa cataccactt ggaggaagtg
501 gtatgacacc agtgatgagc gcctcacgga ggcccatccc ggtggacctt
551 gtcttcctcc ttctccccca atccaaaaac ctccctcttt ccaggagagg
601 gttagggagt cttgcaggat aaaatcctgc gctagggctt ttgccttgga
651 gacctccctg ggtcttaata gggcctgggt aggtttggtg gacatcccca
701 gcacttctgt gtgctgtgcg gatggaagaa ctactggtgg gcaaacgatt
751 gctcaagaag ctgatccctt acaacatagg gtcagtactt ctgtagcccc
801 cggtagggca caatggatct ccgagcgcag acaggctctg cgaaggagag
851 agcaagcaaa tagcttgcaa ggtcttgctg ctcagactga catgactttt
901 gagcaagcca ggaatgctta tcttggtgcc gccgatatga ttgagcaagg
951 cctaccgttg cttccccctt tgcgcagcgc ttatgccccc aggggcttgt
1001 ggagggggcc tcctaccaga gccaattaca cgttagactt taggcttaat
1051 ggtataccga cagggacaaa tacgctggag atattatata atcccgtgtc
1101 ggaggaagag atggaagagt accgggatag aggtatgtcg gcagtggtga
1151 ttgatgcgct agagatagcc ataaatccat ttggcatgcc aggaaatcca
1201 acggacttaa ccgtcgtggc gacatatggg catgagcgtg atatgacacg
1251 cgcctttatt ggatctgctt ccacattcct agggaatggg ttagctaggg
1301 ccatattctt cccgggctta caatatagtc aggaggaacc aaggcgtgag
1351 tccataattc gcctatatgt tgcttcaacc aatgccacag tagacactga
1401 ttcagtcttg gcagccatca gtgttggcac tttgcgtcaa cacgttggtt
1451 ccatgcacta tcgaactgtg gccagtactg tgcaccaggc ccaggtgcaa
1501 ggtactactc ttagggcaac tatgatgggt aatactgttg tagtatcgcc
1551 tgaaggaagc ctagttactg gaacccctga agcaagagtc gaaatagggg
1601 gtggttctag tattaggatg gtgggacctc tacaatggga aagtgtggag
1651 gaaccagggc aaaccttctc tatcagaagc cgctcacggt ctgtgaggat
1701 tgacagaaat gttgatcttc cccaacttga ggccgagccc agattgagct
1751 cgaccgtgag gggattggct ggtaggggag tagtctacat tcctaaggat
1801 tgccaggcaa atagatactt gggcaccctg aatatacgag atatgatttc
1851 agacttcaag ggtgtccagt atgaaaagtg gataactgca ggattagtca
1901 tgcctacttt taagattgtt gttaggctac ctgctaatgc ctttactgga
1951 ttgacgtggg tgatgagctt tgatgcctat aatcggataa ctagtagaat
2001 cactgctagt gcggatcctg tatataccct gtcagtcccc cattggctta
2051 tccaccacaa gaaaggcacg ttttcatgcg agatagacta cggagaa