Sequence of DPV Grapevine fanleaf virus

Grapevine fanleaf virus isolate AB6b polyprotein P2 gene, partial cds.

ACC No: EF426806

Dated: 2009-09-11 | Length: 2097 | CRC: -157331497

                
ID   EF426806; SV 1; linear; genomic RNA; STD; VRL; 2097 BP.
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AC   EF426806;
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DT   31-MAY-2009 (Rel. 101, Created)
DT   11-SEP-2009 (Rel. 102, Last updated, Version 2)
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DE   Grapevine fanleaf virus isolate AB6b polyprotein P2 gene, partial cds.
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KW   .
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OS   Grapevine fanleaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC   Comoviridae; Nepovirus; Subgroup A.
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RN   [1]
RP   1-2097
RX   PUBMED; 19409944.
RA   Vigne E., Marmonier A., Komar V., Lemaire O., Fuchs M.;
RT   "Genetic structure and variability of virus populations in cross-protected
RT   grapevines superinfected by Grapevine fanleaf virus";
RL   Virus Res. 144(1-2):154-162(2009).
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RN   [2]
RP   1-2097
RA   Vigne E., Marmonier A., Fuchs M.;
RT   ;
RL   Submitted (07-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   UMR SVQV, INRA, 28 rue de Herrlisheim, Colmar 68021, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2097
FT                   /organism="Grapevine fanleaf virus"
FT                   /segment="RNA2"
FT                   /isolate="AB6b"
FT                   /mol_type="genomic RNA"
FT                   /country="France"
FT                   /isolation_source="Vitis vinifera cultivar Gewurztraminer"
FT                   /db_xref="taxon:12274"
FT   CDS             <1. .>2097
FT                   /codon_start=1
FT                   /product="polyprotein P2"
FT                   /db_xref="UniProtKB/TrEMBL:C4MBU8"
FT                   /protein_id="ABR09871.1"
FT                   /translation="PHLGGSVEQWLAAIETDPSFRQTVKEDVQANRERPDAIRMFSWKV
FT                   GFGPIDNPNNCNWHFVLTGERPAQPTRPVKADEVVVVPQPKKVVIPSPPPPPTPYFRAV
FT                   GAFAPTRPGFIRATVERLTREREESRAAALFAELPLEYPQGAPLKLSLAMKFAMLKHTT
FT                   WRKWYDTSDERLMEAHPGGPCLPPPPPIQRPPSFQERVRESCRIKSCARAFALETSLGL
FT                   NRAWVGLVDIPSTSVCCADGRTTGGQTIAQEADPLQHRVSTSVAPGRAQWISERRQALR
FT                   RREQANSLQSLAAQTDMTFEQARNAYLGAADMVEQGLPLLPPLRSAYAPRGLWRGPSTR
FT                   ANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMSAVVIDALEIAINPFGMPGN
FT                   PTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPGLQYSQEEPRRESIIRLYVA
FT                   STNATVDTDSVLAAISVGTLRQHVGSMHYRTVASTVHQAQVQGTTLRATMMGNTVVVSP
FT                   EGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFSIRSRSRSVRIDRNVDLPQL
FT                   EAEPRLSSTVRGLAGRGVVYIPKDCQANRYLGTLNIRDMISDFKGVQYEKWITAGLVMP
FT                   TFKIVVRLPANAFTGLTWVMSFDAYNRITSRITASADPVYTLSVPHWLIHHKKGTFSCA
FT                   IDYGE"
FT   mat_peptide     <1. .717
FT                   /product="2A"
FT                   /note="putative homing protein"
FT   mat_peptide     718. .1761
FT                   /product="2B"
FT                   /note="movement protein"
FT   mat_peptide     1762. .>2097
FT                   /product="2C"
FT                   /note="coat protein"
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SQ   Sequence 2097 BP; 510 A; 501 C; 577 G; 509 T; 0 other;

ef426806 Length: 2097  11-SEP-2009  Type: N  Check: 6285  ..

       1  ccccatctag ggggttctgt ggaacaatgg ctggcggcca ttgaaactga
      51  tccctccttc cgccaaactg tcaaggagga tgtccaggca aaccgggagc
     101  gtccagatgc tatccggatg ttttcctgga aagtgggatt cgggcccatc
     151  gacaacccga ataattgcaa ctggcatttc gtccttacgg gcgaaaggcc
     201  agcgcaaccg acccggccgg ttaaagccga tgaggttgtg gtggtgccac
     251  aaccgaagaa ggtggttatt ccatcaccac ctcctccccc gactccctac
     301  tttagggctg ttggggcttt tgcgccaacc aggcccgggt ttattcgggc
     351  cactgtggaa agactcaccc gggaacggga agagtcgaga gctgcggcac
     401  tctttgccga actgccattg gagtaccctc agggtgctcc tttgaagttg
     451  agtctggcga tgaaatttgc catgctcaaa cataccactt ggaggaagtg
     501  gtatgacacc agtgatgagc gcctcatgga ggcccatcct ggtggacctt
     551  gtcttcctcc tcctccccca atccaaagac ctccctcttt ccaggagagg
     601  gttagggagt cttgcaggat aaaatcctgc gccagggctt ttgccttgga
     651  gacctccctg ggtcttaatc gggcctgggt aggtttggtg gacatcccca
     701  gcacttctgt gtgctgtgcg gatggaagaa ctaccggtgg gcaaacgatt
     751  gcccaagaag ctgatccctt acaacatagg gtcagcacgt cagtagcccc
     801  cggtagggca caatggatct ctgagcgcag acaagctctg cgaaggagag
     851  agcaggcaaa tagcttgcag agtcttgctg ctcaaaccga tatgactttt
     901  gagcaggcca ggaatgctta tcttggtgct gctgacatgg tcgagcaagg
     951  cttaccactg cttccccctt tgcgcagtgc ttatgcccct aggggcttgt
    1001  ggaggggacc ttcaaccaga gccaattaca cgcttgattt taggctcaat
    1051  ggaattccga cagggacaaa cacattggag atattgtata atcccgtgtc
    1101  ggaggaagag atggaagagt accgggatag aggtatgtcg gcagtagtga
    1151  tcgatgcgct agaaatagcc ataaatccat ttggcatgcc aggaaatcca
    1201  acggacttaa ccgttgtagc gacatatggg catgagcgtg atatgacacg
    1251  cgcctttatt ggatctgctt ccacgttcct agggaatggg ttagctagag
    1301  ccatattctt tccgggctta caatatagtc aggaggaacc aaggcgtgag
    1351  tccataattc gcctgtatgt tgcttcaact aatgccacag tagacactga
    1401  ttcagtcttg gcagccatca gtgttggcac tttgcgtcaa cacgttggct
    1451  ccatgcacta tcgaactgtg gccagcactg tgcaccaggc ccaggtgcaa
    1501  ggtacaactc ttagggcaac tatgatgggt aacactgttg tagtatcgcc
    1551  tgaaggaagt ctagttactg gaacccctga agcgagagtt gaaatagggg
    1601  gtggttctag tattagaatg gtgggacctc tacaatggga aagtgtggag
    1651  gaaccagggc aaaccttctc tatcagaagc cgctcacggt ctgtgaggat
    1701  tgacagaaat gttgatcttc cccaacttga ggccgagccc agattgagct
    1751  cgaccgtgag gggattggct ggtaggggag tagtttacat tcccaaggat
    1801  tgccaggcaa atagatattt gggcaccctg aatatacgag atatgatttc
    1851  agattttaag ggtgtccagt atgaaaagtg gataactgca gggttagtca
    1901  tgcctacttt caagattgtt gttaggctac ctgctaatgc ctttactgga
    1951  ttgacgtggg tgatgagttt tgatgcttat aaccggataa ctagtagaat
    2001  tactgctagt gcagatcctg tatatacctt gtcagtcccc cactggctta
    2051  tccaccacaa gaaaggcacg ttttcatgtg cgatagacta cggagaa