Sequence of DPV Canna yellow streak virus

Canna Yellow Streak Virus from United Kingdom polyprotein gene, partial cds.

ACC No: EF466139

Dated: 2007-08-17 | Length: 1711 | CRC: -497299267

                
ID   EF466139; SV 1; linear; genomic RNA; STD; VRL; 1711 BP.
XX
AC   EF466139;
XX
DT   02-APR-2007 (Rel. 91, Created)
DT   17-AUG-2007 (Rel. 92, Last updated, Version 2)
XX
DE   Canna Yellow Streak Virus from United Kingdom polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Canna Yellow Streak Virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-1711
RX   PUBMED; 17497235.
RA   Monger W.A., Harju V., Skelton A., Seal S.E., Mumford R.A.;
RT   "Canna yellow streak virus: a new potyvirus associated with severe
RT   streaking symptoms in canna";
RL   Arch. Virol. 152(8):1527-1530(2007).
XX
RN   [2]
RP   1-1711
RA   Monger W.A.;
RT   ;
RL   Submitted (01-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL   Plant Health, Central Science Laboratory, Sand Hutton, York YO41 1LZ, UK
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1711
FT                   /organism="Canna Yellow Streak Virus"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom"
FT                   /isolation_source="cv. Pink Sunburst leaf tissue"
FT                   /db_xref="taxon:433462"
FT   CDS             <1. .1476
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A4L9V8"
FT                   /db_xref="UniProtKB/TrEMBL:A4L9V8"
FT                   /protein_id="ABO64743.1"
FT                   /translation="VVDNTLMLILAFTYTMRVNNISAVEQNNIIRMYGNGDDLLIAVHP
FT                   DFQHILDTMGKHFADLGLNFDFSSRTTNKEDLWFMSHKGVLINEVYIPKLEKERIVAIL
FT                   EWDRSTEPEHRLSAICAAIIESWGYDDLTQHIRKFYQWVLDQEPYKGLALQGKAPYLSE
FT                   SALKRLYLDTAVQDSELFEYYRAIYADLEQQQDDVLEVEHQATEDAGVNADDDKAKKID
FT                   AKDGNKSAGEAKDRGSTSIERVDNPSGQEVTPAEKDVDTGTVGKFTIPKLKKVSPKMRL
FT                   PKVGDKTLLNVEHLITYEPDQRDISNTRATHSQFKQWYEQVKKEYDVSDDQMQIILNGF
FT                   MVWAIENGTSPNINGYWVMMDDQEQVEYPLKPIVEHAKPTLRQCMMHFSDAAEAYIEMR
FT                   NLKQPYMPRYGLLRNLNDKSLARFAFDFYEVTSRTPNRAREAHAQMKAASIRGGTNNLF
FT                   GLDGNVGEDSENTERHVATDVNKNTHSYRGAQI"
FT   mat_peptide     <1. .612
FT                   /product="NIb"
FT                   /note="RNA-dependent RNA polymerase"
FT   mat_peptide     613. .1473
FT                   /product="coat protein"
FT   3'UTR           1477. .1711
XX
SQ   Sequence 1711 BP; 590 A; 321 C; 382 G; 418 T; 0 other;

ef466139 Length: 1711  17-AUG-2007  Type: N  Check: 6864  ..

       1  gtcgtggaca atacactcat gttgatactt gcattcactt acaccatgcg
      51  agtgaacaac atcagcgcgg tagaacaaaa taacataata cgcatgtatg
     101  gaaatggtga tgatttgtta attgcagtgc atccggactt tcagcacatt
     151  cttgatacaa tgggaaagca cttcgctgat ttggggttaa actttgactt
     201  ttcaagccgc acaacgaaca aagaggattt atggtttatg tcacataagg
     251  gcgttttaat taatgaagtg tacataccaa aacttgagaa ggagagaatc
     301  gtagcaattc ttgaatggga tagaagcact gaaccggaac atcgtttatc
     351  tgctatctgt gcagcaatca ttgaatcatg gggttatgat gatctaacgc
     401  aacatattcg aaagttttat caatgggtgt tagatcagga gccatacaaa
     451  gggctagcac tacaagggaa agccccgtat ttgtctgaga gtgctttaaa
     501  aagattgtac ttggacactg ccgtccagga ttctgagctg tttgagtatt
     551  acagagcaat atatgcagat ttagaacaac aacaggacga tgtactagag
     601  gtcgaacatc aagctactga agatgccggt gtcaacgctg atgacgacaa
     651  ggcaaagaag atagatgcga aagatggcaa caaaagcgct ggagaagcta
     701  aagacagagg gagtacatca attgaaagag ttgataaccc aagtggacaa
     751  gaggtaacgc ctgcggagaa ggatgtcgat acaggaacag ttggtaaatt
     801  cacgattcca aaattaaaga aagtctcacc aaaaatgcgg ctaccaaaag
     851  ttggagacaa aacattattg aacgtcgagc acctgataac atatgaaccg
     901  gaccaacgcg acatttcaaa cacaagagca acacattcac agttcaagca
     951  gtggtacgag caagtcaaga aagaatatga tgttagcgac gatcaaatgc
    1001  aaattattct caatggtttt atggtttggg ctattgagaa tggaacatca
    1051  ccaaacatca acgggtattg ggtaatgatg gatgatcaag aacaagtaga
    1101  atacccactc aaaccaattg tggagcacgc caaacccaca ttgcgtcagt
    1151  gcatgatgca tttcagtgat gcagcagaag catacataga aatgagaaat
    1201  cttaagcaac cgtacatgcc cagatacggt ttactcagaa acttaaatga
    1251  taaaagtctc gcacgatttg catttgattt ctatgaagta acttcacgaa
    1301  caccaaatcg agcacgagag gctcatgcac aaatgaaagc agcatcaatc
    1351  cgcggaggaa cgaataattt atttggatta gatggaaatg ttggcgaaga
    1401  ttctgagaac acggagagac acgtggcaac agatgtgaac aaaaatacgc
    1451  actcttatcg cggtgcgcaa atttagattc actggtctct ctatacaatt
    1501  aaataaataa acgccaccaa ctgggaggca ctagtaatat aagtcggtct
    1551  gcacctttcc gagtgatgtt ttacatcctg tcatactagt tgcaatgctg
    1601  ttctcagtta ccaactggtg cacctgaaag gtcgtgttta ctagtagcat
    1651  caaacccatt taaactagtg tggttttacc attatgttta tttgggcgcg
    1701  ataaaaaaaa a