Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate WF2-04 polyprotein gene, partial cds.

ACC No: EF490534

Dated: 2010-12-02 | Length: 1126 | CRC: 1902048908

                
ID   EF490534; SV 1; linear; genomic RNA; STD; VRL; 1126 BP.
XX
AC   EF490534;
XX
DT   01-DEC-2010 (Rel. 107, Created)
DT   02-DEC-2010 (Rel. 107, Last updated, Version 2)
XX
DE   Turnip mosaic virus isolate WF2-04 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1126
RA   Liu J., Wang H., Gao R., Zhu X., Yu X., Li X.;
RT   "3'- terminal genomic sequence of Turnip mosaic virus";
RL   Unpublished.
XX
RN   [2]
RP   1-1126
RA   Liu J., Wang H., Gao R., Zhu X., Yu X., Li X.;
RT   ;
RL   Submitted (13-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1126
FT                   /organism="Turnip mosaic virus"
FT                   /host="radish"
FT                   /lab_host="rape"
FT                   /isolate="WF2-04"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .915
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains NIb and CP"
FT                   /protein_id="ABS20008.1"
FT                   /translation="IFEDYEDGAEVCVYHQAGETLDAGLTEEQKQAEKERKERERSEKE
FT                   RERQRQLALKKGKNAAQEEGDRDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNL
FT                   DHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSP
FT                   NINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYG
FT                   LQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLNGNVGTTVE
FT                   NTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .144
FT                   /product="polymerase"
FT   mat_peptide     145. .912
FT                   /product="coat protein"
XX
SQ   Sequence 1126 BP; 349 A; 212 C; 291 G; 274 T; 0 other;

ef490534 Length: 1126  02-DEC-2010  Type: N  Check: 3993  ..

       1  atcttcgaag attacgaaga tggtgctgaa gtgtgtgttt atcaccaggc
      51  aggtgagacg cttgatgccg gtctaacaga agagcagaag caggctgaaa
     101  aggagagaaa ggagagagag agatcagaga aagagcgaga aaggcaaaga
     151  cagctagcgc ttaagaaagg caaaaacgca gcacaagaag agggcgatcg
     201  tgacaatgaa gtaaacgccg gaacttccgg aacttttagc gtgcctagac
     251  tcaaaagtct tacaagcaaa atgcgtgtgc cgaagtatga gaaaagagtt
     301  gctctcaacc tcgatcattt gatcttatac acgccggagc agacagattt
     351  atccaacacg cgttcaacgc ggaagcagtt tgacacttgg tttgaaggtg
     401  ttatggctga ctatgagcta acggaggata aaatgcaaat aattctcaat
     451  ggtttaatgg tctggtgcat tgagaatgga acctccccga acataaacgg
     501  aatgtgggtg atgatggacg gagatgatca ggtggaattc ccgatcaagc
     551  cgctcattga ccacgccaaa cccacattta ggcaaataat ggcccatttc
     601  agtgacgtag ctgaagcgta cattgaaaag cgtaaccagg accgaccata
     651  catgccacga tatggtcttc agcgcaattt aaccgacatg agcttagctc
     701  gttacgcgtt tgatttctat gaaatgactt ctagaactcc aatacgtgcg
     751  agagaggcac acatccagat gaaagcagca gcactgcgtg gcgcaaataa
     801  taatttgttc ggcttgaatg gtaacgtcgg cacaacggta gagaacacgg
     851  aaaggcatac gaccgaagac gttaatcgga acatgcataa cttacttggc
     901  gttaaggggt tatgaagttg tatgctagta gactataagt agttaagttt
     951  actcgttagt attctcgctt atgggaaata tgtaagtttg ttaaagcagc
    1001  cagtgtgact tcgtcatgtg tgttgttgtt actttctata ttttcgccga
    1051  actttttatt ggtgttagcg catgtggtga gatactatct cgattgcctt
    1101  aacatttgat aggaagcaag ggtcga