Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate TANSG1-06 polyprotein gene, partial cds.

ACC No: EF490547

Dated: 2010-12-02 | Length: 1126 | CRC: -1852407453

                
ID   EF490547; SV 1; linear; genomic RNA; STD; VRL; 1126 BP.
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AC   EF490547;
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DT   01-DEC-2010 (Rel. 107, Created)
DT   02-DEC-2010 (Rel. 107, Last updated, Version 2)
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DE   Turnip mosaic virus isolate TANSG1-06 polyprotein gene, partial cds.
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KW   .
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OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1126
RA   Liu J., Gao R., Wang H., Zhu X., Yu X., Li X.;
RT   "3'- terminal genomic sequence of Turnip mosaic virus";
RL   Unpublished.
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RN   [2]
RP   1-1126
RA   Liu J., Gao R., Wang H., Zhu X., Yu X., Li X.;
RT   ;
RL   Submitted (13-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1126
FT                   /organism="Turnip mosaic virus"
FT                   /host="radish"
FT                   /isolate="TANSG1-06"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .915
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains NIb and CP"
FT                   /protein_id="ABS20021.1"
FT                   /translation="IFEDYEDGTEMCVYHQAGETLDAGMTDEQKQAEKERKERERAEKE
FT                   REKQKQLALKKGKNAALEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNL
FT                   DHLILYTPEQTNLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSP
FT                   NINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYG
FT                   LQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVE
FT                   NTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .48
FT                   /product="polymerase"
FT   mat_peptide     49. .912
FT                   /product="coat protein"
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SQ   Sequence 1126 BP; 354 A; 215 C; 294 G; 263 T; 0 other;

ef490547 Length: 1126  02-DEC-2010  Type: N  Check: 7167  ..

       1  atcttcgaag attacgaaga tggtactgag atgtgtgtat accaccaagc
      51  aggtgaaaca cttgatgcag gcatgacaga tgagcagaaa caggcagaaa
     101  aggagagaaa ggagagagag agagcagaga aagagcgaga gaagcaaaag
     151  cagctagcgc ttaagaaagg caaaaacgca gcactagagg aaggcgaacg
     201  tgacaacgaa gtgaacgccg gaacctctgg aacttttagt gtgcctaggc
     251  tcaaaagcct aacgagcaaa atgcgagtgc cgaagtacga gaaaagagta
     301  gctctcaatc tcgatcatct gattctgtac acgccggagc agacgaatct
     351  gtccaatacg cgttcaacgc ggaagcagtt tgacacttgg ttcgaaggtg
     401  tcatggctga ctacgagcta acggaggata aaatgcaaat aattctcaat
     451  ggtttaatgg tctggtgcat tgagaatgga acctccccaa atataaacgg
     501  aatgtgggtg atgatggacg gtgatgatca ggtggaattc ccgatcaaac
     551  cgctcattga tcacgccaaa cccacattta ggcagataat ggcccatttc
     601  agtgacgtag ctgaagcgta cattgaaaag cgtaaccaag accgaccata
     651  catgccacga tatggtcttc agcgcaattt aaccgacatg agcttagctc
     701  gatacgcgtt tgatttctat gaaatgactt ctagaactcc aatacgtgcg
     751  agagaggcac acatccagat gaaagcagca gcactgcgtg gcgcaaacaa
     801  taatttgttc ggcttggatg gtaacgtcgg cacaacggta gagaacacgg
     851  aaaggcatac gaccgaggac gttaatcgga acatgcataa cttacttggc
     901  gttaaggggt tatgaagttg tatgctagta gactataagt agttaagttt
     951  actcgttagt attctcgctt atgggaaata tgtaagtttg ttaaagcagc
    1001  cagtgtgact tcgtcatgtg tgttgttgtt actttctata ttttcgccga
    1051  acattttatt ggtgttagcg catgtggtga gattgtatct cgattgcctt
    1101  aacatttgat aggaagcaag ggtcga