Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate WF5-06 polyprotein gene, partial cds.

ACC No: EF490551

Dated: 2010-12-02 | Length: 1126 | CRC: -358800381

                
ID   EF490551; SV 1; linear; genomic RNA; STD; VRL; 1126 BP.
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AC   EF490551;
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DT   01-DEC-2010 (Rel. 107, Created)
DT   02-DEC-2010 (Rel. 107, Last updated, Version 2)
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DE   Turnip mosaic virus isolate WF5-06 polyprotein gene, partial cds.
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KW   .
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OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1126
RA   Liu J., Gao R., Wang H., Zhu X., Yu X., Li X.;
RT   "3'- terminal genomic sequence of Turnip mosaic virus";
RL   Unpublished.
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RN   [2]
RP   1-1126
RA   Liu J., Gao R., Wang H., Zhu X., Yu X., Li X.;
RT   ;
RL   Submitted (13-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1126
FT                   /organism="Turnip mosaic virus"
FT                   /host="radish"
FT                   /isolate="WF5-06"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .915
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains NIb and CP"
FT                   /protein_id="ABS20025.1"
FT                   /translation="IFEDYEDGVEVCVYHQAGETLDAGLTDEQKQAEKERKEKERAEKE
FT                   RERQKQLALKKGKNAALEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNL
FT                   DHLILYTPEQTDLSNTRSTRKQSDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSP
FT                   NINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYG
FT                   LQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVE
FT                   NTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .48
FT                   /product="polymerase"
FT   mat_peptide     49. .912
FT                   /product="coat protein"
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SQ   Sequence 1126 BP; 353 A; 218 C; 292 G; 263 T; 0 other;

ef490551 Length: 1126  02-DEC-2010  Type: N  Check: 7269  ..

       1  atcttcgaag attacgaaga cggtgttgaa gtgtgtgtat atcaccaggc
      51  aggcgaaaca cttgatgcag gcctgacaga tgagcagaaa caggcagaaa
     101  aggagaggaa agagaaagag agagcagaga aagagcgcga aaggcaaaag
     151  cagttggcac tcaagaaagg caaaaacgca gcattagagg aaggcgaacg
     201  cgacaacgaa gtgaacgccg gaacctctgg aacttttagt gtgcctaggc
     251  tcaaaagcct aacgagcaaa atgcgtgtgc caaagtacga gaaaagagta
     301  gccctcaatc tcgatcatct gattctgtac acgccggagc aaacggatct
     351  atccaatacg cgttcaacgc ggaagcagtc tgacacttgg tttgaaggtg
     401  tcatggctga ctacgagcta acggaggata aaatgcaaat aattctcaat
     451  ggtttaatgg tctggtgcat tgagaatgga acctccccaa atataaacgg
     501  aatgtgggtg atgatggacg gtgatgatca ggtggaattc ccgatcaaac
     551  cgctcattga ccacgccaaa cccacattta ggcaaataat ggcccatttc
     601  agtgacgtag ctgaagcgta cattgaaaag cgtaaccaag accgaccata
     651  catgccacga tatggtcttc agcgcaattt aaccgacatg agcttagctc
     701  ggtacgcatt tgatttctat gaaatgactt ctagaactcc aatacgtgcg
     751  agagaggcac acatccagat gaaagcagca gcactgcgtg gcgcaaataa
     801  taatttgttc ggcttggatg gtaacgtcgg cacaacggta gagaacacgg
     851  aaaggcatac gaccgaggac gttaatcgga acatgcataa cttacttggc
     901  gttaaggggt tatgaagttg tatgctagta gactataagt agttaagttt
     951  actcgttagt attctcgctt atgggaaata tgtaagtttg ttaaagcagc
    1001  cagtgtgact tcgtcatgtg tgttgttgtt actttctata ttttcgccga
    1051  acattttatt ggtgttagcg catgtggtga gattgtatct cgattgcctt
    1101  aacatttgat aggaagcaag ggtcga